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WormBase Tree Display for Gene: WBGene00016960

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Name Class

WBGene00016960SMapS_parentSequenceC56C10
IdentityVersion2
NameCGC_namevps-33.2Paper_evidenceWBPaper00031805
Person_evidenceWBPerson426
Sequence_nameC56C10.1
Molecular_nameC56C10.1
C56C10.1.1
CE30636
Other_nameCELE_C56C10.1Accession_evidenceNDBBX284602
Public_namevps-33.2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:58WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
215 Mar 2007 17:00:31WBPerson2970Name_changeCGC_namevps-33.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
Allele (31)
In_clusterconserved_miRNA_siRNA_cluster
RNASeq_FPKM (74)
GO_annotation (18)
Ortholog (41)
ParalogWBGene00006757Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009654Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015130Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016643Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020298Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionInvolved in spermatocyte division. Predicted to be located in lysosome. Predicted to be part of CORVET complex. Expressed in intestine; pharynx; and spermatheca. Used to study ARC syndrome. Human ortholog(s) of this gene implicated in several diseases, including arthrogryposis multiplex congenita; arthrogryposis, renal dysfunction, and cholestasis 1; and progressive familial intrahepatic cholestasis. Is an ortholog of human VPS33B (VPS33B late endosome and lysosome associated).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:0050763Homo sapiensPaper_evidenceWBPaper00032464
Curator_confirmedWBPerson38202
Date_last_updated30 May 2018 00:00:00
Potential_modelDOID:557Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12712)
DOID:0111353Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12712)
DOID:0070221Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12712)
DOID:13580Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12712)
DOID:0080954Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:12712)
Models_disease_in_annotationWBDOannot00000535
Molecular_infoCorresponding_CDSC56C10.1
Corresponding_transcriptC56C10.1.1
Other_sequenceTcol_isotig02052
CR04921
Hbac_isotig05781
Dviv_isotig29676
Oden_isotig27960
CRC09241_1
Acan_isotig14752
Associated_featureWBsf644309
WBsf657701
WBsf221470
Experimental_infoRNAi_result (14)
Expr_patternExpr12007
Expr13085
Expr1012862
Expr1037275
Expr1147239
Expr2018024
Expr2036161
Drives_constructWBCnstr00019957
WBCnstr00027677
WBCnstr00038575
Construct_productWBCnstr00019957
WBCnstr00027677
WBCnstr00038575
Microarray_results (22)
Expression_cluster (118)
InteractionWBInteraction000031166
WBInteraction000145187
WBInteraction000162145
WBInteraction000162146
WBInteraction000162172
WBInteraction000176311
WBInteraction000182954
WBInteraction000187710
WBInteraction000192495
WBInteraction000196118
WBInteraction000213263
WBInteraction000223640
WBInteraction000223986
WBInteraction000237472
WBInteraction000241334
WBInteraction000242925
WBInteraction000244583
WBInteraction000252032
WBInteraction000253787
WBInteraction000269990
WBInteraction000274163
WBInteraction000276614
WBInteraction000277185
WBInteraction000277631
WBInteraction000288198
WBInteraction000300076
WBInteraction000303671
WBInteraction000316741
WBInteraction000320503
WBInteraction000326948
WBInteraction000327687
WBInteraction000328149
WBInteraction000334760
WBInteraction000335118
WBInteraction000353246
WBInteraction000354987
WBInteraction000357391
WBInteraction000361019
WBInteraction000361196
WBInteraction000364453
WBInteraction000365044
WBInteraction000367002
WBInteraction000371671
WBInteraction000374451
WBInteraction000374901
WBInteraction000375020
WBInteraction000377433
WBInteraction000377791
WBInteraction000377924
WBInteraction000381016
WBInteraction000381810
WBInteraction000385105
WBInteraction000388296
WBInteraction000390122
WBInteraction000390130
WBInteraction000390824
WBInteraction000391689
WBInteraction000393861
WBInteraction000399778
WBInteraction000399843
WBInteraction000406132
WBInteraction000406905
WBInteraction000409058
WBInteraction000409095
WBInteraction000412755
WBInteraction000414581
WBInteraction000416794
WBInteraction000418994
WBInteraction000419730
WBInteraction000424333
WBInteraction000428352
WBInteraction000434344
WBInteraction000439349
WBInteraction000440136
WBInteraction000440509
WBInteraction000445626
WBInteraction000447483
WBInteraction000450816
WBInteraction000456129
WBInteraction000456218
WBInteraction000456634
WBInteraction000457770
WBInteraction000457838
WBInteraction000522765
WBInteraction000544197
WBInteraction000566192
Map_infoMapIIPosition-0.080891Error0.00486
PositivePositive_cloneC56C10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031805
WBPaper00032464
WBPaper00038491
WBPaper00050040
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene