WormBase Tree Display for Gene: WBGene00009661

WBGene00009661 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: patr-1 Person_evidence: WBPerson1787
      Sequence_name: F43G6.9
      Molecular_name: F43G6.9
        F43G6.9.1
        CE18675
      Other_name: CELE_F43G6.9 Accession_evidence: NDB BX284602
      Public_name: patr-1
    DB_info: Database: AceView gene 2M66
        WormQTL gene WBGene00009661
        WormFlux gene WBGene00009661
        NDB locus_tag CELE_F43G6.9
        Panther gene CAEEL|WormBase=WBGene00009661|UniProtKB=Q20374
          family PTHR21551
        NCBI gene 174808
        RefSeq protein NM_064113.7
        SwissProt UniProtAcc Q20374
        UniProt_GCRP UniProtAcc Q20374
        OMIM gene 614661
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Apr 2005 11:05:24 WBPerson2970 Name_change: CGC_name: patr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: patr
    Allele (53)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP2576
    Ortholog (35)
    Structured_description: Concise_description: patr-1 encodes the C. elegans ortholog of the Saccharomyces cerevisiae decapping activator Pat1p; patr-1 is involved in decapping-mediated mRNA decay and is required for proper recruitment of several components of P-bodies, cytoplasmic mRNA processing bodies; in C. elegans, patr-1 is an essential gene, required for embryonic and larval development, as well as wild-type brood sizes; PATR-1 localizes to P-bodies. Paper_evidence: WBPaper00032091
            WBPaper00032097
          Curator_confirmed: WBPerson1843
          Date_last_updated: 07 Jul 2010 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Involved in determination of adult lifespan. Located in P-body. Is an ortholog of human PATL1 (PAT1 homolog 1, processing body mRNA decay factor) and PATL2 (PAT1 homolog 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: EFO:MONDO:0014769 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:33630)
  Molecular_info: Corresponding_CDS: F43G6.9
    Corresponding_transcript: F43G6.9.1
    Other_sequence (24)
    Associated_feature: WBsf650622
      WBsf976357
      WBsf976358
      WBsf976359
      WBsf976360
      WBsf976361
      WBsf223998
      WBsf223999
      WBsf224000
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr8554
      Expr1017358
      Expr1034220
      Expr1151074
      Expr2014755
      Expr2032989
    Drives_construct: WBCnstr00032016
    Construct_product: WBCnstr00005581
      WBCnstr00005590
      WBCnstr00032016
    Antibody: WBAntibody00001619
      WBAntibody00001622
    Microarray_results (23)
    Expression_cluster (156)
    Interaction: WBInteraction000117983
      WBInteraction000139379
      WBInteraction000142639
      WBInteraction000148498
      WBInteraction000160476
      WBInteraction000175804
      WBInteraction000180785
      WBInteraction000181231
      WBInteraction000181429
      WBInteraction000182787
      WBInteraction000189655
      WBInteraction000203799
      WBInteraction000213116
      WBInteraction000213746
      WBInteraction000214107
      WBInteraction000219744
      WBInteraction000220529
      WBInteraction000222800
      WBInteraction000222850
      WBInteraction000224635
      WBInteraction000226125
      WBInteraction000227173
      WBInteraction000229943
      WBInteraction000231105
      WBInteraction000234023
      WBInteraction000234566
      WBInteraction000235393
      WBInteraction000240281
      WBInteraction000244667
      WBInteraction000257753
      WBInteraction000263177
      WBInteraction000265212
      WBInteraction000266613
      WBInteraction000273625
      WBInteraction000274285
      WBInteraction000277676
      WBInteraction000277744
      WBInteraction000283819
      WBInteraction000290220
      WBInteraction000290897
      WBInteraction000293089
      WBInteraction000295058
      WBInteraction000296934
      WBInteraction000300253
      WBInteraction000301411
      WBInteraction000304589
      WBInteraction000304791
      WBInteraction000308332
      WBInteraction000310390
      WBInteraction000310713
      WBInteraction000313930
      WBInteraction000315395
      WBInteraction000324745
      WBInteraction000327933
      WBInteraction000330526
      WBInteraction000331884
      WBInteraction000335039
      WBInteraction000335609
      WBInteraction000337952
      WBInteraction000342935
      WBInteraction000349266
      WBInteraction000350847
      WBInteraction000351527
      WBInteraction000355664
      WBInteraction000355749
      WBInteraction000356105
      WBInteraction000361024
      WBInteraction000369098
      WBInteraction000371056
      WBInteraction000378996
      WBInteraction000380586
      WBInteraction000380861
      WBInteraction000384014
      WBInteraction000389708
      WBInteraction000390317
      WBInteraction000392209
      WBInteraction000395667
      WBInteraction000395899
      WBInteraction000396130
      WBInteraction000397690
      WBInteraction000399071
      WBInteraction000401880
      WBInteraction000402218
      WBInteraction000403393
      WBInteraction000403978
      WBInteraction000408447
      WBInteraction000411081
      WBInteraction000411728
      WBInteraction000413316
      WBInteraction000414444
      WBInteraction000414840
      WBInteraction000418514
      WBInteraction000419863
      WBInteraction000423624
      WBInteraction000425757
      WBInteraction000430462
      WBInteraction000432765
      WBInteraction000432801
      WBInteraction000433620
      WBInteraction000433777
      WBInteraction000434645
      WBInteraction000435148
      WBInteraction000438908
      WBInteraction000439788
      WBInteraction000439869
      WBInteraction000440302
      WBInteraction000443560
      WBInteraction000445069
      WBInteraction000447681
      WBInteraction000451145
      WBInteraction000451690
      WBInteraction000453112
      WBInteraction000460683
      WBInteraction000461787
      WBInteraction000462666
      WBInteraction000540326
      WBInteraction000549038
      WBInteraction000549402
      WBInteraction000556283
      WBInteraction000560999
      WBInteraction000565984
      WBInteraction000571660
      WBInteraction000576851
      WBInteraction000578263
      WBInteraction000583740
      WBInteraction000584132
      WBInteraction000585309
  Map_info: Map: II Position: 4.04727
    Positive: Positive_clone: F43G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032091
    WBPaper00032097
    WBPaper00038491
    WBPaper00041859
    WBPaper00045542
    WBPaper00050743
    WBPaper00055090
    WBPaper00059203
    WBPaper00064886
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods.
  Method: Gene