WormBase Tree Display for Gene: WBGene00006585
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| WBGene00006585 | SMap | S_parent | Sequence | T20B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tni-3 | Person_evidence | WBPerson300 | |||||
| Sequence_name | T20B3.2 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | CELE_T20B3.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tni-3 | ||||||||
| DB_info | Database | AceView | gene | 5R314 | |||||
| WormQTL | gene | WBGene00006585 | |||||||
| WormFlux | gene | WBGene00006585 | |||||||
| NDB | locus_tag | CELE_T20B3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006585|UniProtKB=Q9XUN9 | |||||||
| family | PTHR13738 | ||||||||
| NCBI | gene | 180127 | |||||||
| RefSeq | protein | NM_074849.9 | |||||||
| SwissProt | UniProtAcc | Q9XUN9 | |||||||
| TREEFAM | TREEFAM_ID | TF313374 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUN9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tni | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00049392 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00006584 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006764 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006586 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tni-3 encodes one of the four elegans troponin I genes; tni-3 is required for coordinated movement, normal body and muscle morphology and for the proper contractions of the vulva and anus; CeTNI-3 interacts with both the body wall and pharynx troponin C; tni-3 is strongly expressed in body wall, head and vulval muscles. | Paper_evidence | WBPaper00025009 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 29 Jan 2007 00:00:00 | ||||||||
| Automated_description | Enables troponin C binding activity. Involved in egg-laying behavior; muscle contraction; and post-embryonic body morphogenesis. Located in sarcomere. Expressed in body wall musculature; non-striated muscle; rectal muscle; and in male. Is an ortholog of human TNNI1 (troponin I1, slow skeletal type). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T20B3.2 | |||||||
| Corresponding_transcript | T20B3.2.1 | ||||||||
| Other_sequence (66) | |||||||||
| Associated_feature | WBsf047564 | ||||||||
| WBsf047565 | |||||||||
| WBsf653495 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033405 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077598 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053595 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066673 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078124 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078123 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018885 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066586 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00012212 | ||||||||
| WBCnstr00012216 | |||||||||
| WBCnstr00034288 | |||||||||
| Construct_product | WBCnstr00013929 | ||||||||
| WBCnstr00034288 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction | WBInteraction000031853 | ||||||||
| WBInteraction000113397 | |||||||||
| WBInteraction000115615 | |||||||||
| WBInteraction000117616 | |||||||||
| WBInteraction000117617 | |||||||||
| WBInteraction000117620 | |||||||||
| WBInteraction000117623 | |||||||||
| WBInteraction000122942 | |||||||||
| WBInteraction000122945 | |||||||||
| WBInteraction000122946 | |||||||||
| WBInteraction000172823 | |||||||||
| WBInteraction000172831 | |||||||||
| WBInteraction000172839 | |||||||||
| WBInteraction000172847 | |||||||||
| WBInteraction000173646 | |||||||||
| WBInteraction000173932 | |||||||||
| WBInteraction000292496 | |||||||||
| WBInteraction000522554 | |||||||||
| WBInteraction000522557 | |||||||||
| WBInteraction000542700 | |||||||||
| WBInteraction000543498 | |||||||||
| WBInteraction000552887 | |||||||||
| WBInteraction000554926 | |||||||||
| WBInteraction000554929 | |||||||||
| WBInteraction000554937 | |||||||||
| WBInteraction000554941 | |||||||||
| WBInteraction000554944 | |||||||||
| WBInteraction000560891 | |||||||||
| WBInteraction000561679 | |||||||||
| WBInteraction000564342 | |||||||||
| WBInteraction000580452 | |||||||||
| Map_info | Map | V | Position | 11.2175 | Error | 0.002532 | |||
| Positive | Positive_clone | T20B3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Priest J, Allen TS]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
