WormBase Tree Display for Gene: WBGene00006539
expand all nodes | collapse all nodes | view schema
| WBGene00006539 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tbb-6 | |||||||
| Sequence_name | T04H1.9 | ||||||||
| Molecular_name | T04H1.9 | ||||||||
| T04H1.9.1 | |||||||||
| CE36500 | |||||||||
| T04H1.9.2 | |||||||||
| Other_name | CELE_T04H1.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tbb-6 | ||||||||
| DB_info | Database | AceView | gene | 5M743 | |||||
| WormQTL | gene | WBGene00006539 | |||||||
| WormFlux | gene | WBGene00006539 | |||||||
| NDB | locus_tag | CELE_T04H1.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006539|UniProtKB=G5EF01 | |||||||
| family | PTHR11588 | ||||||||
| NCBI | gene | 179680 | |||||||
| RefSeq | protein | NM_073674.4 | |||||||
| TrEMBL | UniProtAcc | G5EF01 | |||||||
| UniProt_GCRP | UniProtAcc | G5EF01 | |||||||
| OMIM | gene | 602661 | |||||||
| 616768 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tbb | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Automated_description | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in PERK-mediated unfolded protein response. Predicted to be located in cytoplasm and microtubule. Expressed in pharynx. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles 3A. Is an ortholog of several human genes including TUBB3 (tubulin beta 3 class III); TUBB6 (tubulin beta 6 class V); and TUBB8B (tubulin beta 8B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0090137 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20772) | ||||
| DOID:0081017 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20772) | ||||||
| EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20773) | ||||||
| Molecular_info | Corresponding_CDS | T04H1.9 | |||||||
| Corresponding_CDS_history | T04H1.9:wp121 | ||||||||
| Corresponding_transcript | T04H1.9.1 | ||||||||
| T04H1.9.2 | |||||||||
| Other_sequence | BM033631.1 | ||||||||
| Associated_feature | WBsf232623 | ||||||||
| WBsf232624 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00112763 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052423 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113316 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076645 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035155 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112764 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113143 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113087 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018163 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12995 | ||||||||
| Expr1019125 | |||||||||
| Expr1032688 | |||||||||
| Expr1156047 | |||||||||
| Expr2035455 | |||||||||
| Drives_construct | WBCnstr00023113 | ||||||||
| WBCnstr00034314 | |||||||||
| Construct_product | WBCnstr00034314 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (366) | |||||||||
| Interaction | WBInteraction000536222 | ||||||||
| WBInteraction000536223 | |||||||||
| WBInteraction000536224 | |||||||||
| WBInteraction000536225 | |||||||||
| WBInteraction000536231 | |||||||||
| WBInteraction000536232 | |||||||||
| WBInteraction000536237 | |||||||||
| WBInteraction000536238 | |||||||||
| WBInteraction000536239 | |||||||||
| WBInteraction000536240 | |||||||||
| WBInteraction000536241 | |||||||||
| WBInteraction000536242 | |||||||||
| WBInteraction000536243 | |||||||||
| WBInteraction000536244 | |||||||||
| WBInteraction000536245 | |||||||||
| WBInteraction000536246 | |||||||||
| WBInteraction000536247 | |||||||||
| WBInteraction000536248 | |||||||||
| WBInteraction000536249 | |||||||||
| WBInteraction000536250 | |||||||||
| WBInteraction000536251 | |||||||||
| WBInteraction000536252 | |||||||||
| WBInteraction000536253 | |||||||||
| WBInteraction000536254 | |||||||||
| WBInteraction000536291 | |||||||||
| WBInteraction000536297 | |||||||||
| WBInteraction000536298 | |||||||||
| WBInteraction000536299 | |||||||||
| WBInteraction000536303 | |||||||||
| WBInteraction000536304 | |||||||||
| WBInteraction000536305 | |||||||||
| WBInteraction000536306 | |||||||||
| WBInteraction000536307 | |||||||||
| WBInteraction000536318 | |||||||||
| WBInteraction000536319 | |||||||||
| WBInteraction000536320 | |||||||||
| WBInteraction000536321 | |||||||||
| WBInteraction000536322 | |||||||||
| WBInteraction000536323 | |||||||||
| WBInteraction000536324 | |||||||||
| WBInteraction000536325 | |||||||||
| WBInteraction000536326 | |||||||||
| WBInteraction000536345 | |||||||||
| WBInteraction000536346 | |||||||||
| WBInteraction000536347 | |||||||||
| WBInteraction000536348 | |||||||||
| WBInteraction000536349 | |||||||||
| WBInteraction000536360 | |||||||||
| WBInteraction000536361 | |||||||||
| WBInteraction000536362 | |||||||||
| WBInteraction000536363 | |||||||||
| WBInteraction000536364 | |||||||||
| WBInteraction000536365 | |||||||||
| WBInteraction000536366 | |||||||||
| WBInteraction000536367 | |||||||||
| WBInteraction000536368 | |||||||||
| WBInteraction000536369 | |||||||||
| WBInteraction000536370 | |||||||||
| WBInteraction000536371 | |||||||||
| WBInteraction000536372 | |||||||||
| WBInteraction000548626 | |||||||||
| WBInteraction000560340 | |||||||||
| WBInteraction000577792 | |||||||||
| WBInteraction000584935 | |||||||||
| Map_info | Map | V | Position | 3.96132 | Error | 0.002851 | |||
| Positive | Positive_clone | T04H1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5483 | |||||||
| 5284 | |||||||||
| 5624 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028194 | ||||||||
| WBPaper00052083 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058665 | |||||||||
| WBPaper00059214 | |||||||||
| WBPaper00059604 | |||||||||
| WBPaper00062599 | |||||||||
| WBPaper00064215 | |||||||||
| WBPaper00064957 | |||||||||
| Remark | Sequence connection from [Gogonea CB, Siddiqui SS] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
