WormBase Tree Display for Gene: WBGene00004728
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| WBGene00004728 | SMap | S_parent | Sequence | F21H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sax-2 | Person_evidence | WBPerson42 | |||||
| Sequence_name | F21H11.2 | ||||||||
| Molecular_name (6) | |||||||||
| Other_name | CELE_F21H11.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | sax-2 | ||||||||
| DB_info | Database | AceView | gene | 3G219 | |||||
| WormQTL | gene | WBGene00004728 | |||||||
| WormFlux | gene | WBGene00004728 | |||||||
| NDB | locus_tag | CELE_F21H11.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004728|UniProtKB=Q5DX48 | |||||||
| family | PTHR12295 | ||||||||
| NCBI | gene | 175697 | |||||||
| RefSeq | protein | NM_171118.6 | |||||||
| NM_171117.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF313568 | |||||||
| TrEMBL | UniProtAcc | Q5DX48 | |||||||
| H2KZU6 | |||||||||
| UniProt_GCRP | UniProtAcc | Q5DX48 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 26 Nov 2004 09:02:28 | WBPerson2970 | Event | Acquires_merge | WBGene00017682 | ||||
| Acquires_merge | WBGene00017682 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sax | ||||||||
| Allele (298) | |||||||||
| Strain | WBStrain00005244 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022537 | ||||||||
| 00022538 | |||||||||
| 00022539 | |||||||||
| 00022540 | |||||||||
| 00022541 | |||||||||
| 00113102 | |||||||||
| Ortholog (54) | |||||||||
| Structured_description | Concise_description | sax-2 encodes a conserved protein that contains HEAT/Armadillo repeats and is related to Drosophila furry; sax-2 activity is required for maintaining normal neuronal morphology, particularly proper neurite outgrowth and termination; sax-2 activity is also required for normal male mating behavior and gonad morphogenesis in both sexes; a sax-2 reporter gene fusion indicates that sax-2 is expressed in head, tail, and ventral cord neurons. | Paper_evidence | WBPaper00003665 | |||||
| WBPaper00004340 | |||||||||
| WBPaper00024477 | |||||||||
| WBPaper00027335 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 24 Jan 2008 00:00:00 | ||||||||
| Automated_description | Involved in neuron projection development. Predicted to be located in cell cortex and site of polarized growth. Expressed in head neurons; tail neurons; and ventral nerve cord. Is an ortholog of human FRY (FRY microtubule binding protein) and FRYL (FRY like transcription coactivator). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F21H11.2a | |||||||
| F21H11.2b | |||||||||
| Corresponding_CDS_history | F21H11.2a:wp138 | ||||||||
| F21H11.2b:wp138 | |||||||||
| Corresponding_transcript | F21H11.2a.1 | ||||||||
| F21H11.2b.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature (23) | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr3110 | ||||||||
| Expr1020311 | |||||||||
| Expr1032332 | |||||||||
| Expr1149172 | |||||||||
| Expr2015607 | |||||||||
| Expr2033842 | |||||||||
| Drives_construct | WBCnstr00035425 | ||||||||
| Construct_product | WBCnstr00035425 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (155) | |||||||||
| Interaction | WBInteraction000000926 | ||||||||
| WBInteraction000007433 | |||||||||
| WBInteraction000007678 | |||||||||
| WBInteraction000007701 | |||||||||
| WBInteraction000030272 | |||||||||
| WBInteraction000030594 | |||||||||
| WBInteraction000031687 | |||||||||
| WBInteraction000033901 | |||||||||
| WBInteraction000034124 | |||||||||
| WBInteraction000040071 | |||||||||
| WBInteraction000040072 | |||||||||
| WBInteraction000040157 | |||||||||
| WBInteraction000040158 | |||||||||
| WBInteraction000040161 | |||||||||
| WBInteraction000040162 | |||||||||
| WBInteraction000040163 | |||||||||
| WBInteraction000043133 | |||||||||
| WBInteraction000152627 | |||||||||
| WBInteraction000165643 | |||||||||
| WBInteraction000214236 | |||||||||
| WBInteraction000233223 | |||||||||
| WBInteraction000239245 | |||||||||
| WBInteraction000254482 | |||||||||
| WBInteraction000277035 | |||||||||
| WBInteraction000281992 | |||||||||
| WBInteraction000283975 | |||||||||
| WBInteraction000316703 | |||||||||
| WBInteraction000318916 | |||||||||
| WBInteraction000329729 | |||||||||
| WBInteraction000342987 | |||||||||
| WBInteraction000359429 | |||||||||
| WBInteraction000393338 | |||||||||
| WBInteraction000401705 | |||||||||
| WBInteraction000403670 | |||||||||
| WBInteraction000409450 | |||||||||
| WBInteraction000426737 | |||||||||
| WBInteraction000521535 | |||||||||
| WBInteraction000568271 | |||||||||
| Map_info | Map | III | Position | -2.13133 | Error | 0.008596 | |||
| Positive | Positive_clone | F21H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4046 | |||||||
| 4725 | |||||||||
| Reference (29) | |||||||||
| Remark | Description and Allele (ky216) data extracted from Zallen JA, Kirch SA, Bargmann CI [ck1 020828] | ||||||||
| Method | Gene |
