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WormBase Tree Display for Gene: WBGene00003947

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Name Class

WBGene00003947EvidenceCGC_data_submission
SMapS_parentSequenceK08D12
IdentityVersion1
NameCGC_namepbs-1Person_evidenceWBPerson1551
Sequence_nameK08D12.1
Molecular_name (3)
Other_nameCELE_K08D12.1Accession_evidenceNDBBX284604
Public_namepbs-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpbs
Allele (17)
StrainWBStrain00051284
RNASeq_FPKM (74)
GO_annotation (11)
Ortholog (43)
Paralog (13)
Structured_descriptionConcise_descriptionpbs-1 encodes a protease subunit with highest similarity to vertebrate proteasome subunit beta type 6 that affects fertility, embryonic viability, locomotion, and larval viabilityPaper_evidenceWBPaper00005654
WBPaper00006395
Curator_confirmedWBPerson48
Date_last_updated07 Jul 2004 00:00:00
Automated_descriptionPredicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Human ortholog(s) of this gene implicated in several diseases, including Huntington's disease; autoimmune disease (multiple); and carcinoma (multiple). Is an ortholog of human PSMB9 (proteasome 20S subunit beta 9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (13)
Molecular_infoCorresponding_CDSK08D12.1
Corresponding_CDS_historyK08D12.1:wp268
Corresponding_transcriptK08D12.1.1
Other_sequence (98)
Associated_featureWBsf651652
WBsf995509
WBsf229780
Experimental_infoRNAi_resultWBRNAi00095677Inferred_automaticallyRNAi_primary
WBRNAi00025917Inferred_automaticallyRNAi_primary
WBRNAi00008972Inferred_automaticallyRNAi_primary
WBRNAi00050262Inferred_automaticallyRNAi_primary
WBRNAi00022804Inferred_automaticallyRNAi_primary
WBRNAi00064987Inferred_automaticallyRNAi_primary
WBRNAi00076559Inferred_automaticallyRNAi_primary
WBRNAi00085486Inferred_automaticallyRNAi_primary
Expr_patternExpr1024172
Expr1031873
Expr1153957
Expr2014765
Expr2032999
Microarray_results (17)
Expression_cluster (139)
InteractionWBInteraction000034984
WBInteraction000035154
WBInteraction000036724
WBInteraction000037010
WBInteraction000037015
WBInteraction000040748
WBInteraction000040760
WBInteraction000041232
WBInteraction000041233
WBInteraction000041234
WBInteraction000041235
WBInteraction000041620
WBInteraction000042153
WBInteraction000043160
WBInteraction000046610
WBInteraction000047860
WBInteraction000048746
WBInteraction000048759
WBInteraction000048775
WBInteraction000048776
WBInteraction000048777
WBInteraction000048778
WBInteraction000048779
WBInteraction000048780
WBInteraction000048781
WBInteraction000048782
WBInteraction000048783
WBInteraction000048993
WBInteraction000049524
WBInteraction000050246
WBInteraction000101521
WBInteraction000101954
WBInteraction000102689
WBInteraction000102989
WBInteraction000103063
WBInteraction000103106
WBInteraction000103308
WBInteraction000103616
WBInteraction000104621
WBInteraction000106076
WBInteraction000109334
WBInteraction000109366
WBInteraction000109752
WBInteraction000111164
WBInteraction000111165
WBInteraction000111488
WBInteraction000111489
WBInteraction000111490
WBInteraction000111491
WBInteraction000111492
WBInteraction000111547
WBInteraction000111561
WBInteraction000111571
WBInteraction000111579
WBInteraction000111585
WBInteraction000111604
WBInteraction000111616
WBInteraction000111625
WBInteraction000111632
WBInteraction000111641
WBInteraction000111650
WBInteraction000111659
WBInteraction000111731
WBInteraction000111753
WBInteraction000113074
WBInteraction000113589
WBInteraction000117547
WBInteraction000117745
WBInteraction000121893
WBInteraction000126952
WBInteraction000126956
WBInteraction000134765
WBInteraction000146194
WBInteraction000153584
WBInteraction000154297
WBInteraction000154298
WBInteraction000154299
WBInteraction000164727
WBInteraction000166598
WBInteraction000174553
WBInteraction000174597
WBInteraction000179985
WBInteraction000181579
WBInteraction000187669
WBInteraction000198836
WBInteraction000233423
WBInteraction000247635
WBInteraction000253632
WBInteraction000261178
WBInteraction000265133
WBInteraction000274709
WBInteraction000345644
WBInteraction000371635
WBInteraction000387100
WBInteraction000396815
WBInteraction000398014
WBInteraction000419754
WBInteraction000434254
WBInteraction000434255
WBInteraction000440367
WBInteraction000460626
WBInteraction000466458
WBInteraction000468354
WBInteraction000468831
WBInteraction000471101
WBInteraction000472190
WBInteraction000474593
WBInteraction000475108
WBInteraction000551908
WBInteraction000560927
WBInteraction000563300
WBInteraction000579357
WBInteraction000580227
WBInteraction000582575
Map_infoMapIVPosition-16.1887Error0.024851
PositivePositive_cloneK08D12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026640
WBPaper00030965
WBPaper00035228
WBPaper00038491
WBPaper00055090
WBPaper00056008
WBPaper00060396
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene