WormBase Tree Display for Gene: WBGene00003619

WBGene00003619 Evidence: Paper_evidence: WBPaper00003416
  SMap: S_parent: Sequence: F43C1
  Identity: Version: 1
    Name: CGC_name: nhr-20 Person_evidence: WBPerson600
      Sequence_name: F43C1.4
      Molecular_name: F43C1.4
        F43C1.4.1
        CE28025
      Other_name: CELE_F43C1.4 Accession_evidence: NDB BX284603
      Public_name: nhr-20
    DB_info: Database: AceView gene 3F320
        WormQTL gene WBGene00003619
        WormFlux gene WBGene00003619
        NDB locus_tag CELE_F43C1.4
        Panther gene CAEEL|WormBase=WBGene00003619|UniProtKB=Q09565
          family PTHR46397
        NCBI gene 175546
        RefSeq protein NM_065448.7
        SwissProt UniProtAcc Q09565
        TREEFAM TREEFAM_ID TF321941
        UniProt_GCRP UniProtAcc Q09565
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (45)
    Legacy_information: NMK. Nuclear hormone receptor superfamily. [AE]
      [C.elegansII] NMK. Nuclear hormone receptor superfamily. Sequenced: F43C1.4[AE]
    Strain: WBStrain00002155
    RNASeq_FPKM (74)
    GO_annotation: 00054762
      00054763
      00054764
      00054765
      00054766
      00054767
      00111278
      00111279
      00111280
      00111281
    Ortholog (29)
    Paralog (225)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head and tail. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43C1.4
    Corresponding_CDS_history: F43C1.4:wp52
    Corresponding_transcript: F43C1.4.1
    Other_sequence (3)
    Associated_feature: WBsf716539
      WBsf978692
      WBsf992069
      WBsf992070
      WBsf1014726
      WBsf226493
      WBsf226494
    Transcription_factor: WBTranscriptionFactor000287
  Experimental_info: RNAi_result: WBRNAi00005221 Inferred_automatically: RNAi_primary
      WBRNAi00032172 Inferred_automatically: RNAi_primary
      WBRNAi00047163 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1185
      Expr6057
      Expr6058
      Expr7556
      Expr1017934
      Expr1031665
      Expr1151024
      Expr2014113
      Expr2032352
    Drives_construct: WBCnstr00002914
      WBCnstr00002915
      WBCnstr00010137
      WBCnstr00012701
      WBCnstr00035995
    Construct_product: WBCnstr00010137
      WBCnstr00016480
      WBCnstr00021750
      WBCnstr00035995
    Microarray_results (19)
    Expression_cluster (113)
    Interaction: WBInteraction000029315
      WBInteraction000030331
      WBInteraction000364419
      WBInteraction000372731
      WBInteraction000384188
      WBInteraction000506034
      WBInteraction000514765
      WBInteraction000514766
      WBInteraction000514771
      WBInteraction000514772
      WBInteraction000514773
      WBInteraction000514774
      WBInteraction000514775
      WBInteraction000526835
      WBInteraction000526836
      WBInteraction000526837
      WBInteraction000526838
      WBInteraction000526839
      WBInteraction000526840
      WBInteraction000526841
      WBInteraction000526958
      WBInteraction000528142
      WBInteraction000528343
      WBInteraction000528374
      WBInteraction000528411
      WBInteraction000528673
      WBInteraction000528738
      WBInteraction000528823
      WBInteraction000528854
      WBInteraction000528981
      WBInteraction000529072
      WBInteraction000529210
      WBInteraction000529236
      WBInteraction000529446
      WBInteraction000529783
      WBInteraction000529965
      WBInteraction000530609
      WBInteraction000530712
      WBInteraction000530785
      WBInteraction000530936
      WBInteraction000530978
      WBInteraction000531104
      WBInteraction000531549
      WBInteraction000531846
      WBInteraction000531939
      WBInteraction000531980
      WBInteraction000531997
      WBInteraction000532292
      WBInteraction000532441
      WBInteraction000532507
      WBInteraction000532726
      WBInteraction000532833
      WBInteraction000533416
      WBInteraction000533444
      WBInteraction000533457
      WBInteraction000533596
      WBInteraction000533729
      WBInteraction000533970
      WBInteraction000534128
      WBInteraction000534147
      WBInteraction000534222
      WBInteraction000534233
      WBInteraction000534319
      WBInteraction000534506
      WBInteraction000548053
  Map_info: Map: III Position: -3.52868 Error: 0.059109
    Positive: Positive_clone: F43C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003754
    WBPaper00012651
    WBPaper00015440
    WBPaper00022044
    WBPaper00027309
    WBPaper00062625
  Remark: Map III Position -3.810000
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene