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WormBase Tree Display for Gene: WBGene00002998

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Name Class

WBGene00002998SMapS_parentSequenceZK637
IdentityVersion1
NameCGC_namelin-9Person_evidenceWBPerson261
Sequence_nameZK637.7
Molecular_nameZK637.7a
ZK637.7a.1
CE28194
ZK637.7b
CE28195
ZK637.7b.1
Other_nameCELE_ZK637.7Accession_evidenceNDBBX284603
Public_namelin-9
DB_infoDatabaseAceViewgene3J990
WormQTLgeneWBGene00002998
WormFluxgeneWBGene00002998
NDBlocus_tagCELE_ZK637.7
PanthergeneCAEEL|WormBase=WBGene00002998|UniProtKB=P30630
familyPTHR21689
NCBIgene176256
RefSeqproteinNM_001027844.5
NM_001027845.6
SwissProtUniProtAccP30630
TREEFAMTREEFAM_IDTF314315
UniProt_GCRPUniProtAccP30630
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
Allele (58)
Legacy_informationn112 : adult hermaphrodite wildtype Muv in homozygotes with lin-8 or lin-38. NA3 (n942 n943 (sterile non-Muv alone sterile Muv with lin-8 etc.).
See also n112, n942, n943
[C.elegansII] n112 : adult hermaphrodite wildtype Muv in homozygotes with lin-8 or lin-38. OA2: n942, n943 (both sterile non-Muv alone; sterile Muv with lin-8 etc.). Cloned: encodes predicted 642 aa novel protein, hydrophobic, possible C-term transmembrane domains. [Ferguson and Horvitz 1989; MT]
Strain (12)
RNASeq_FPKM (74)
GO_annotation (21)
Contained_in_operonCEOP3878
Ortholog (36)
Structured_descriptionConcise_descriptionlin-9 encodes two novel proteins that are conserved amongst C. elegans, Drosophila, plants, and vertebrates; lin-9 activity is required redundantly with activity of the synMuv A genes, such as lin-8, for negative regulation of the RTK/Ras-mediated signal transduction pathway that controls vulval development; in addition, lin-9 activity is required non-redundantly for hermaphrodite gonadal sheath cell development (and thus, reproduction), as well as for development of the male reproductive system including the male sensory rays and spicules.Paper_evidenceWBPaper00000496
WBPaper00004314
Curator_confirmedWBPerson1843
Date_last_updated02 Feb 2006 00:00:00
Automated_descriptionPredicted to enable DNA binding activity. Involved in embryo development; male sex differentiation; and regulation of multicellular organismal development. Part of DRM complex. Is an ortholog of human LIN9 (lin-9 DREAM MuvB core complex component).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK637.7a
ZK637.7b
Corresponding_CDS_historyZK637.7:wp52
Corresponding_transcriptZK637.7a.1
ZK637.7b.1
Other_sequence (23)
Associated_feature (13)
Experimental_infoRNAi_result (19)
Expr_patternExpr1024919
Expr1031395
Expr1163007
Expr2013202
Expr2031434
Drives_constructWBCnstr00000434
WBCnstr00036297
Construct_productWBCnstr00000434
WBCnstr00036297
AntibodyWBAntibody00001175
Microarray_results (28)
Expression_cluster (150)
InteractionWBInteraction000000041
WBInteraction000000223
WBInteraction000001101
WBInteraction000002173
WBInteraction000005003
WBInteraction000005013
WBInteraction000005054
WBInteraction000005723
WBInteraction000007736
WBInteraction000031067
WBInteraction000050641
WBInteraction000050654
WBInteraction000052281
WBInteraction000126627
WBInteraction000127461
WBInteraction000133152
WBInteraction000142047
WBInteraction000149166
WBInteraction000149171
WBInteraction000160818
WBInteraction000161294
WBInteraction000161301
WBInteraction000161310
WBInteraction000161336
WBInteraction000161337
WBInteraction000166456
WBInteraction000179630
WBInteraction000196874
WBInteraction000196881
WBInteraction000207612
WBInteraction000228741
WBInteraction000228742
WBInteraction000233814
WBInteraction000234176
WBInteraction000259187
WBInteraction000264590
WBInteraction000328895
WBInteraction000328897
WBInteraction000332674
WBInteraction000335167
WBInteraction000373986
WBInteraction000407004
WBInteraction000417677
WBInteraction000433483
WBInteraction000447432
WBInteraction000454662
WBInteraction000470024
WBInteraction000470661
WBInteraction000500510
WBInteraction000500511
WBInteraction000500512
WBInteraction000500513
WBInteraction000500531
WBInteraction000500536
WBInteraction000500541
WBInteraction000500546
WBInteraction000500551
WBInteraction000500556
WBInteraction000500561
WBInteraction000500674
WBInteraction000500684
WBInteraction000500770
WBInteraction000500771
WBInteraction000500807
WBInteraction000500866
WBInteraction000500961
WBInteraction000502683
WBInteraction000502684
WBInteraction000502685
WBInteraction000502687
WBInteraction000502690
WBInteraction000503610
WBInteraction000503612
WBInteraction000503724
WBInteraction000504617
WBInteraction000504618
WBInteraction000518970
WBInteraction000518981
WBInteraction000518982
WBInteraction000518983
WBInteraction000519128
WBInteraction000539227
WBInteraction000539358
WBInteraction000540897
WBInteraction000554699
WBInteraction000555610
WBInteraction000555950
WBInteraction000556006
WBInteraction000557622
WBInteraction000563363
WBInteraction000564026
WBInteraction000565046
WBInteraction000567116
Map_infoMapIIIPosition-0.006983Error0.001785
Well_ordered
PositivePositive_cloneZK637Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point (2)
Multi_point325
384
385
386
387
758
759
4957
5435
Reference (79)
MethodGene