WormBase Tree Display for Gene: WBGene00001716

WBGene00001716 Evidence: Paper_evidence: WBPaper00003717
  SMap: S_parent: Sequence: T02E9
  Identity: Version: 1
    Name: CGC_name: grl-7 Person_evidence: WBPerson83
      Sequence_name: T02E9.2
      Molecular_name: T02E9.2a
        T02E9.2a.1
        CE13064
        T02E9.2b
        CE38539
        T02E9.2b.1
      Other_name: CELE_T02E9.2 Accession_evidence: NDB BX284605
      Public_name: grl-7
    DB_info: Database: WormQTL gene WBGene00001716
        WormFlux gene WBGene00001716
        NDB locus_tag CELE_T02E9.2
        Panther gene CAEEL|WormBase=WBGene00001716|UniProtKB=O18015
          family PTHR23261
        NCBI gene 179569
        RefSeq protein NM_001028923.7
            NM_001028922.4
        TREEFAM TREEFAM_ID TF316573
        TrEMBL UniProtAcc Q52GX6
            O18015
        UniProt_GCRP UniProtAcc O18015
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:25 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: grl
    Allele (31)
    Strain: WBStrain00032683
    RNASeq_FPKM (74)
    GO_annotation: 00031255
    Ortholog (29)
    Paralog (32)
    Structured_description: Concise_description: grl-7 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-7 is expressed in intestine, hypodermis, and seamcells; the Grl domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins. Paper_evidence: WBPaper00003717
            WBPaper00006525
            WBPaper00026841
            WBPaper00027263
          Curator_confirmed: WBPerson567
          Date_last_updated: 05 Nov 2006 00:00:00
      Automated_description: Located in apical plasma membrane. Expressed in hypodermal cell and ventral cord blast cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T02E9.2a
      T02E9.2b
    Corresponding_transcript: T02E9.2a.1
      T02E9.2b.1
    Other_sequence: CRC02593_1
      CR11413
      PPC06936_1
      OOC00271_1
      CR01442
    Associated_feature: WBsf669378
      WBsf669379
      WBsf1001327
      WBsf1001328
      WBsf234526
  Experimental_info: RNAi_result: WBRNAi00018027 Inferred_automatically: RNAi_primary
      WBRNAi00035063 Inferred_automatically: RNAi_primary
      WBRNAi00052216 Inferred_automatically: RNAi_primary
    Expr_pattern (9)
    Drives_construct: WBCnstr00003902
      WBCnstr00012011
      WBCnstr00036744
      WBCnstr00042492
    Construct_product: WBCnstr00036744
      WBCnstr00042492
    Microarray_results (25)
    Expression_cluster (306)
    Interaction: WBInteraction000100935
      WBInteraction000102620
      WBInteraction000103041
      WBInteraction000103162
      WBInteraction000103738
      WBInteraction000104109
      WBInteraction000104820
      WBInteraction000105049
      WBInteraction000105204
      WBInteraction000107170
      WBInteraction000107322
      WBInteraction000108956
      WBInteraction000109425
      WBInteraction000112703
      WBInteraction000112857
      WBInteraction000113491
      WBInteraction000114903
      WBInteraction000115326
      WBInteraction000115406
      WBInteraction000115495
      WBInteraction000116360
      WBInteraction000117824
      WBInteraction000117835
      WBInteraction000117856
      WBInteraction000118469
      WBInteraction000118987
      WBInteraction000119221
      WBInteraction000119863
      WBInteraction000120456
      WBInteraction000122031
      WBInteraction000122093
      WBInteraction000122103
      WBInteraction000122116
      WBInteraction000122224
      WBInteraction000124371
      WBInteraction000124781
      WBInteraction000125280
      WBInteraction000125773
      WBInteraction000126868
      WBInteraction000127005
      WBInteraction000127589
      WBInteraction000133575
      WBInteraction000134448
      WBInteraction000134811
      WBInteraction000135459
      WBInteraction000136182
      WBInteraction000136265
      WBInteraction000136743
      WBInteraction000136944
      WBInteraction000137058
      WBInteraction000137626
      WBInteraction000138256
      WBInteraction000140163
      WBInteraction000141743
      WBInteraction000142542
      WBInteraction000144052
      WBInteraction000144383
      WBInteraction000144385
      WBInteraction000144546
      WBInteraction000144893
      WBInteraction000145449
      WBInteraction000146173
      WBInteraction000147375
      WBInteraction000147607
      WBInteraction000147835
      WBInteraction000148032
      WBInteraction000148097
      WBInteraction000148105
      WBInteraction000149025
      WBInteraction000149564
      WBInteraction000149747
      WBInteraction000149982
      WBInteraction000150300
      WBInteraction000150929
      WBInteraction000151216
      WBInteraction000156790
      WBInteraction000156879
      WBInteraction000157715
      WBInteraction000160466
      WBInteraction000160856
      WBInteraction000161772
      WBInteraction000162049
      WBInteraction000163286
      WBInteraction000163569
      WBInteraction000164201
      WBInteraction000165088
      WBInteraction000170856
      WBInteraction000172055
      WBInteraction000175629
      WBInteraction000176927
      WBInteraction000177857
      WBInteraction000177984
      WBInteraction000178812
      WBInteraction000179174
      WBInteraction000179242
      WBInteraction000180066
      WBInteraction000180759
      WBInteraction000180959
      WBInteraction000181882
      WBInteraction000189091
      WBInteraction000189232
      WBInteraction000191104
      WBInteraction000191964
      WBInteraction000192616
      WBInteraction000194442
      WBInteraction000195157
      WBInteraction000195935
      WBInteraction000196690
      WBInteraction000198154
      WBInteraction000198554
      WBInteraction000198681
      WBInteraction000198978
      WBInteraction000199157
      WBInteraction000200014
      WBInteraction000200133
      WBInteraction000202526
      WBInteraction000203289
      WBInteraction000203748
      WBInteraction000211340
      WBInteraction000211355
      WBInteraction000212744
      WBInteraction000214035
      WBInteraction000217302
      WBInteraction000218083
      WBInteraction000220146
      WBInteraction000222054
      WBInteraction000225404
      WBInteraction000229267
      WBInteraction000229307
      WBInteraction000229637
      WBInteraction000231365
      WBInteraction000241016
      WBInteraction000242881
      WBInteraction000250906
      WBInteraction000251097
      WBInteraction000252664
      WBInteraction000257796
      WBInteraction000260232
      WBInteraction000263733
      WBInteraction000266917
      WBInteraction000267297
      WBInteraction000268031
      WBInteraction000269371
      WBInteraction000270275
      WBInteraction000270896
      WBInteraction000273243
      WBInteraction000273945
      WBInteraction000277842
      WBInteraction000283935
      WBInteraction000287633
      WBInteraction000287932
      WBInteraction000291708
      WBInteraction000295605
      WBInteraction000296457
      WBInteraction000297682
      WBInteraction000298412
      WBInteraction000298735
      WBInteraction000300169
      WBInteraction000300845
      WBInteraction000302851
      WBInteraction000314810
      WBInteraction000317564
      WBInteraction000320643
      WBInteraction000335684
      WBInteraction000336679
      WBInteraction000336863
      WBInteraction000340501
      WBInteraction000341456
      WBInteraction000341881
      WBInteraction000358572
      WBInteraction000359763
      WBInteraction000361083
      WBInteraction000362553
      WBInteraction000365153
      WBInteraction000373201
      WBInteraction000379666
      WBInteraction000380129
      WBInteraction000381214
      WBInteraction000382398
      WBInteraction000385889
      WBInteraction000389430
      WBInteraction000390814
      WBInteraction000392085
      WBInteraction000392822
      WBInteraction000394135
      WBInteraction000409310
      WBInteraction000411321
      WBInteraction000411440
      WBInteraction000422862
      WBInteraction000430336
      WBInteraction000435362
      WBInteraction000435666
      WBInteraction000441720
      WBInteraction000443390
      WBInteraction000446616
      WBInteraction000457721
      WBInteraction000458815
      WBInteraction000461623
      WBInteraction000515405
      WBInteraction000544440
      WBInteraction000560540
      WBInteraction000569662
  Map_info: Map: V Position: 3.07557 Error: 0.000511
    Positive: Positive_clone: T02E9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003717
    WBPaper00028754
    WBPaper00031588
    WBPaper00047478
    WBPaper00057376
    WBPaper00058700
    WBPaper00061320
    WBPaper00064105
  Remark: ground-like gene, contains ground-like domain, hedgehog-related Paper_evidence: WBPaper00003717
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene