WormBase Tree Display for Gene: WBGene00000631

WBGene00000631 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F33D11
  Identity: Version: 1
    Name: CGC_name: col-54 Person_evidence: WBPerson345
      Sequence_name: F33D11.3
      Molecular_name: F33D11.3
        F33D11.3.1
        CE09893
      Other_name: CELE_F33D11.3 Accession_evidence: NDB BX284601
      Public_name: col-54
    DB_info: Database: AceView gene 1G421
        WormQTL gene WBGene00000631
        WormFlux gene WBGene00000631
        NDB locus_tag CELE_F33D11.3
        Panther gene CAEEL|WormBase=WBGene00000631|UniProtKB=O44774
          family PTHR24637
        NCBI gene 185226
        RefSeq protein NM_059293.5
        TREEFAM TREEFAM_ID TF319073
        TrEMBL UniProtAcc O44774
        UniProt_GCRP UniProtAcc O44774
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (21)
    Strain: WBStrain00055291
    RNASeq_FPKM (74)
    GO_annotation: 00033392
      00033393
      00033394
      00033395
      00107635
    Ortholog (26)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Involved in defense response to Gram-negative bacterium. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F33D11.3
    Corresponding_transcript: F33D11.3.1
    Other_sequence: MHC00617_1
      JI479963.1
      CR08292
      CBC07449_1
      CRC10269_1
      MHC09985_1
      Tcol_isotig16111
      EX537632.1
    Associated_feature: WBsf217716
  Experimental_info: RNAi_result: WBRNAi00003571 Inferred_automatically: RNAi_primary
      WBRNAi00091326 Inferred_automatically: RNAi_primary
      WBRNAi00092233 Inferred_automatically: RNAi_primary
      WBRNAi00031713 Inferred_automatically: RNAi_primary
      WBRNAi00046194 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13629
      Expr1027968
      Expr1030373
      Expr1150082
      Expr2010406
      Expr2028648
    Drives_construct: WBCnstr00037413
      WBCnstr00039889
    Construct_product: WBCnstr00037413
    Microarray_results (19)
    Expression_cluster (239)
    Interaction: WBInteraction000114269
      WBInteraction000116126
      WBInteraction000118936
      WBInteraction000120140
      WBInteraction000122104
      WBInteraction000124336
      WBInteraction000125144
      WBInteraction000134326
      WBInteraction000135864
      WBInteraction000136045
      WBInteraction000136674
      WBInteraction000136713
      WBInteraction000139344
      WBInteraction000141139
      WBInteraction000141666
      WBInteraction000142186
      WBInteraction000142761
      WBInteraction000144170
      WBInteraction000144172
      WBInteraction000145857
      WBInteraction000146785
      WBInteraction000148263
      WBInteraction000148330
      WBInteraction000149266
      WBInteraction000149401
      WBInteraction000150453
      WBInteraction000151934
      WBInteraction000156622
      WBInteraction000157222
      WBInteraction000159674
      WBInteraction000159954
      WBInteraction000160972
      WBInteraction000161125
      WBInteraction000161137
      WBInteraction000161963
      WBInteraction000162734
      WBInteraction000166604
      WBInteraction000166663
      WBInteraction000167932
      WBInteraction000168166
      WBInteraction000170398
      WBInteraction000171330
      WBInteraction000171547
      WBInteraction000175262
      WBInteraction000177472
      WBInteraction000179156
      WBInteraction000179390
      WBInteraction000180888
      WBInteraction000186630
      WBInteraction000190363
      WBInteraction000190733
      WBInteraction000192310
      WBInteraction000193389
      WBInteraction000194651
      WBInteraction000196690
      WBInteraction000199545
      WBInteraction000200139
      WBInteraction000203019
      WBInteraction000203356
      WBInteraction000203875
      WBInteraction000204388
      WBInteraction000208079
      WBInteraction000208259
      WBInteraction000208464
      WBInteraction000209265
      WBInteraction000210937
      WBInteraction000213236
      WBInteraction000213343
      WBInteraction000214083
      WBInteraction000216313
      WBInteraction000217368
      WBInteraction000218550
      WBInteraction000219197
      WBInteraction000222394
      WBInteraction000223125
      WBInteraction000225324
      WBInteraction000225758
      WBInteraction000226000
      WBInteraction000229274
      WBInteraction000229352
      WBInteraction000230792
      WBInteraction000236189
      WBInteraction000237279
      WBInteraction000237743
      WBInteraction000238909
      WBInteraction000240329
      WBInteraction000241761
      WBInteraction000250075
      WBInteraction000251431
      WBInteraction000253746
      WBInteraction000255430
      WBInteraction000258599
      WBInteraction000258641
      WBInteraction000261797
      WBInteraction000262444
      WBInteraction000263149
      WBInteraction000265325
      WBInteraction000266148
      WBInteraction000268137
      WBInteraction000269983
      WBInteraction000272144
      WBInteraction000272599
      WBInteraction000274421
      WBInteraction000274432
      WBInteraction000277055
      WBInteraction000277665
      WBInteraction000280832
      WBInteraction000286418
      WBInteraction000295985
      WBInteraction000296083
      WBInteraction000303281
      WBInteraction000304507
      WBInteraction000305022
      WBInteraction000305292
      WBInteraction000306050
      WBInteraction000312651
      WBInteraction000313209
      WBInteraction000314825
      WBInteraction000316191
      WBInteraction000316411
      WBInteraction000318831
      WBInteraction000320295
      WBInteraction000322320
      WBInteraction000323835
      WBInteraction000324594
      WBInteraction000326395
      WBInteraction000335373
      WBInteraction000337348
      WBInteraction000341973
      WBInteraction000354060
      WBInteraction000354947
      WBInteraction000355262
      WBInteraction000359438
      WBInteraction000360908
      WBInteraction000363982
      WBInteraction000365971
      WBInteraction000366683
      WBInteraction000367497
      WBInteraction000374318
      WBInteraction000381625
      WBInteraction000384925
      WBInteraction000387022
      WBInteraction000392428
      WBInteraction000393216
      WBInteraction000399180
      WBInteraction000400706
      WBInteraction000405288
      WBInteraction000405391
      WBInteraction000412377
      WBInteraction000415719
      WBInteraction000417137
      WBInteraction000419694
      WBInteraction000424680
      WBInteraction000430224
      WBInteraction000440297
      WBInteraction000442715
      WBInteraction000443278
      WBInteraction000443511
      WBInteraction000445854
      WBInteraction000447644
      WBInteraction000449928
      WBInteraction000450415
      WBInteraction000451937
      WBInteraction000458248
      WBInteraction000462025
      WBInteraction000463405
      WBInteraction000465524
      WBInteraction000465757
      WBInteraction000467717
      WBInteraction000469428
      WBInteraction000519749
      WBInteraction000544080
  Map_info: Map: I Position: 0.470444 Error: 0.000208
    Positive: Positive_clone: F33D11 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (2)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene