WormBase Tree Display for Gene: WBGene00000592
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| WBGene00000592 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F08H9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | coh-3 | |||||||
| Sequence_name | F08H9.1 | ||||||||
| Molecular_name | F08H9.1 | ||||||||
| F08H9.1.1 | |||||||||
| CE35852 | |||||||||
| Other_name | CELE_F08H9.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | coh-3 | ||||||||
| DB_info | Database | AceView | gene | 5O939 | |||||
| WormQTL | gene | WBGene00000592 | |||||||
| WormFlux | gene | WBGene00000592 | |||||||
| NDB | locus_tag | CELE_F08H9.1 | |||||||
| NCBI | gene | 179949 | |||||||
| RefSeq | protein | NM_074182.3 | |||||||
| TREEFAM | TREEFAM_ID | TF322271 | |||||||
| TrEMBL | UniProtAcc | Q19232 | |||||||
| UniProt_GCRP | UniProtAcc | Q19232 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | coh | ||||||||
| Allele (53) | |||||||||
| Legacy_information | [J. Loidl] no RNAi phenotype found. Name assigned on the basis of sequence homology | ||||||||
| (F08H9.1) is homolog to the Rad21/Scc1/Rec8 family of cohesion proteins with known members in C. elegans, S. cerevisiae, S. pombe, A. thaliana and vertebrates. R-S-R is the acronym of the founder family | |||||||||
| Strain | WBStrain00035161 | ||||||||
| WBStrain00035162 | |||||||||
| WBStrain00035163 | |||||||||
| WBStrain00035164 | |||||||||
| WBStrain00035528 | |||||||||
| WBStrain00055740 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063986 | ||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00021560 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | coh-3 encodes a member of the Rad21/Rec8-like family of cohesion proteins known as kleisins; COH-3, along with its paralogs REC-8 and COH-4, function as members of a meiotic cohesin complex that mediates sister chromatid cohesion; coh-3 transcripts are expressed in the germline. | Paper_evidence | WBPaper00004722 | |||||
| WBPaper00005330 | |||||||||
| WBPaper00005486 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00034684 | |||||||||
| Curator_confirmed (2) | |||||||||
| Date_last_updated | 29 Nov 2010 00:00:00 | ||||||||
| Automated_description | Involved in meiotic sister chromatid cohesion. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08H9.1 | |||||||
| Corresponding_CDS_history | F08H9.1:wp111 | ||||||||
| Corresponding_transcript | F08H9.1.1 | ||||||||
| Other_sequence | CR12282 | ||||||||
| CRC05466_1 | |||||||||
| CBC13933_1 | |||||||||
| Associated_feature | WBsf1002022 | ||||||||
| WBsf1002023 | |||||||||
| WBsf1002024 | |||||||||
| WBsf1020844 | |||||||||
| WBsf1020845 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr11960 | ||||||||
| Expr1027870 | |||||||||
| Expr1030347 | |||||||||
| Expr1148024 | |||||||||
| Expr2010298 | |||||||||
| Expr2028540 | |||||||||
| Drives_construct | WBCnstr00037442 | ||||||||
| Construct_product | WBCnstr00037442 | ||||||||
| Antibody | WBAntibody00002562 | ||||||||
| WBAntibody00002687 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction | WBInteraction000030141 | ||||||||
| WBInteraction000133978 | |||||||||
| WBInteraction000133979 | |||||||||
| WBInteraction000140916 | |||||||||
| WBInteraction000163404 | |||||||||
| WBInteraction000188629 | |||||||||
| WBInteraction000191905 | |||||||||
| WBInteraction000217817 | |||||||||
| WBInteraction000236467 | |||||||||
| WBInteraction000248810 | |||||||||
| WBInteraction000252336 | |||||||||
| WBInteraction000271602 | |||||||||
| WBInteraction000317386 | |||||||||
| WBInteraction000331438 | |||||||||
| WBInteraction000346003 | |||||||||
| WBInteraction000368036 | |||||||||
| WBInteraction000376924 | |||||||||
| WBInteraction000410099 | |||||||||
| WBInteraction000417752 | |||||||||
| WBInteraction000420826 | |||||||||
| WBInteraction000424083 | |||||||||
| WBInteraction000430329 | |||||||||
| WBInteraction000436571 | |||||||||
| WBInteraction000439084 | |||||||||
| WBInteraction000439448 | |||||||||
| WBInteraction000443302 | |||||||||
| WBInteraction000446093 | |||||||||
| WBInteraction000554910 | |||||||||
| Map_info | Map | V | Position | 6.41169 | Error | 0.006664 | |||
| Positive | Positive_clone | F08H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4170 | |||||||
| 4233 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Sequence connection from [Loidl J] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
