Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00003449

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00003449SMapS_parentSequenceK07F5
IdentityVersion1
NameCGC_namemsp-56Person_evidenceWBPerson680
Sequence_nameK07F5.3
Molecular_nameK07F5.3
K07F5.3.1
CE03853
Other_nameCELE_K07F5.3Accession_evidenceNDBBX284604
Public_namemsp-56
DB_infoDatabaseAceViewgene4K607
WormQTLgeneWBGene00003449
WormFluxgeneWBGene00003449
NDBlocus_tagCELE_K07F5.3
NCBIgene177830
RefSeqproteinNM_069361.7
SwissProtUniProtAccP05634
UniProt_GCRPUniProtAccP05634
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmsp
AlleleWBVar01500079
WBVar01498996
WBVar01499925
WBVar01499770
WBVar01499771
WBVar02123820
WBVar00245500
WBVar01500038
WBVar01500039
WBVar01500245
Legacy_informationCluster of four genes including msp-56 msp-10 (transcribed).
[C.elegansII] NMK. Encodes MSP (16kD); sequenced. Defines msp-56 cluster (three genes). [Ward et al. (1988); BA]
RNASeq_FPKM (74)
Ortholog (94)
Paralog (49)
Structured_descriptionConcise_descriptionmsp-56 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes.Paper_evidenceWBPaper00001023
WBPaper00002143
WBPaper00004591
WBPaper00005670
Curator_confirmedWBPerson324
Date_last_updated31 Mar 2005 00:00:00
Automated_descriptionExpressed in gonad; oocyte; and sperm. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK07F5.3
Corresponding_transcriptK07F5.3.1
Other_sequence (46)
Associated_featureWBsf997485
WBsf228884
Experimental_infoRNAi_resultWBRNAi00050181Inferred_automaticallyRNAi_primary
WBRNAi00021857Inferred_automaticallyRNAi_primary
WBRNAi00023452Inferred_automaticallyRNAi_primary
WBRNAi00110872Inferred_automaticallyRNAi_primary
WBRNAi00039659Inferred_automaticallyRNAi_primary
WBRNAi00053266Inferred_automaticallyRNAi_primary
WBRNAi00018674Inferred_automaticallyRNAi_primary
WBRNAi00016747Inferred_automaticallyRNAi_primary
WBRNAi00018675Inferred_automaticallyRNAi_primary
WBRNAi00046117Inferred_automaticallyRNAi_primary
WBRNAi00108519Inferred_automaticallyRNAi_primary
WBRNAi00050188Inferred_automaticallyRNAi_primary
WBRNAi00016833Inferred_automaticallyRNAi_primary
WBRNAi00059203Inferred_automaticallyRNAi_primary
WBRNAi00016744Inferred_automaticallyRNAi_primary
WBRNAi00010148Inferred_automaticallyRNAi_primary
WBRNAi00014208Inferred_automaticallyRNAi_primary
WBRNAi00050325Inferred_automaticallyRNAi_primary
WBRNAi00016748Inferred_automaticallyRNAi_primary
WBRNAi00023029Inferred_automaticallyRNAi_primary
WBRNAi00050187Inferred_automaticallyRNAi_primary
WBRNAi00053267Inferred_automaticallyRNAi_primary
Expr_patternExpr3417
Expr1153884
Expr2013783
Expr2032022
Drives_constructWBCnstr00005292
WBCnstr00036111
Construct_productWBCnstr00036111
AntibodyWBAntibody00000037
WBAntibody00000038
WBAntibody00000854
WBAntibody00000855
WBAntibody00000856
WBAntibody00000857
WBAntibody00000858
Microarray_resultsSMD_K07F5.3
A_12_P120255
A_12_P146520
GPL19516_CGZ0011710
GPL21109_Cat_K07F5.3
GPL8673_K07F5_3P00022
GPL9450_K07F5.3
cea2.d.32754
Expression_cluster (191)
InteractionWBInteraction000101844
WBInteraction000102945
WBInteraction000103208
WBInteraction000103753
WBInteraction000103834
WBInteraction000103870
WBInteraction000103913
WBInteraction000104421
WBInteraction000105003
WBInteraction000106102
WBInteraction000106498
WBInteraction000107097
WBInteraction000107391
WBInteraction000109354
WBInteraction000109979
WBInteraction000110748
WBInteraction000111026
WBInteraction000111033
WBInteraction000111358
WBInteraction000111850
WBInteraction000111856
WBInteraction000111912
WBInteraction000113050
WBInteraction000116069
WBInteraction000120589
WBInteraction000120624
WBInteraction000120633
WBInteraction000122014
WBInteraction000122491
WBInteraction000124226
WBInteraction000127120
WBInteraction000133577
WBInteraction000134230
WBInteraction000134390
WBInteraction000134558
WBInteraction000134888
WBInteraction000137953
WBInteraction000138412
WBInteraction000139375
WBInteraction000139540
WBInteraction000140966
WBInteraction000141614
WBInteraction000141851
WBInteraction000142333
WBInteraction000145157
WBInteraction000145769
WBInteraction000148486
WBInteraction000148548
WBInteraction000151605
WBInteraction000151830
WBInteraction000151993
WBInteraction000152777
WBInteraction000160617
WBInteraction000161157
WBInteraction000161260
WBInteraction000161666
WBInteraction000164688
WBInteraction000168654
WBInteraction000170682
WBInteraction000175610
WBInteraction000176722
WBInteraction000177490
WBInteraction000179447
WBInteraction000181835
WBInteraction000183111
WBInteraction000184243
WBInteraction000188278
WBInteraction000195700
WBInteraction000196946
WBInteraction000200591
WBInteraction000203252
WBInteraction000205435
WBInteraction000205477
WBInteraction000205658
WBInteraction000208320
WBInteraction000211550
WBInteraction000212798
WBInteraction000213191
WBInteraction000215606
WBInteraction000216567
WBInteraction000217046
WBInteraction000218959
WBInteraction000219347
WBInteraction000221358
WBInteraction000222704
WBInteraction000223334
WBInteraction000226432
WBInteraction000227206
WBInteraction000232466
WBInteraction000233251
WBInteraction000237230
WBInteraction000237803
WBInteraction000239221
WBInteraction000245228
WBInteraction000246213
WBInteraction000246474
WBInteraction000247232
WBInteraction000249794
WBInteraction000251082
WBInteraction000258105
WBInteraction000261115
WBInteraction000261585
WBInteraction000262129
WBInteraction000262912
WBInteraction000263313
WBInteraction000263559
WBInteraction000264958
WBInteraction000265857
WBInteraction000268677
WBInteraction000280197
WBInteraction000282071
WBInteraction000283522
WBInteraction000284114
WBInteraction000285982
WBInteraction000286773
WBInteraction000287311
WBInteraction000288621
WBInteraction000291419
WBInteraction000294155
WBInteraction000297396
WBInteraction000300291
WBInteraction000301954
WBInteraction000302852
WBInteraction000305619
WBInteraction000305899
WBInteraction000310924
WBInteraction000313742
WBInteraction000314623
WBInteraction000315264
WBInteraction000320044
WBInteraction000322397
WBInteraction000322627
WBInteraction000324766
WBInteraction000325838
WBInteraction000326880
WBInteraction000327381
WBInteraction000329783
WBInteraction000330304
WBInteraction000330767
WBInteraction000332194
WBInteraction000332416
WBInteraction000339087
WBInteraction000340358
WBInteraction000340621
WBInteraction000342685
WBInteraction000344499
WBInteraction000346665
WBInteraction000356448
WBInteraction000357559
WBInteraction000365002
WBInteraction000365232
WBInteraction000368529
WBInteraction000369383
WBInteraction000370519
WBInteraction000379254
WBInteraction000379363
WBInteraction000379528
WBInteraction000383558
WBInteraction000385039
WBInteraction000385530
WBInteraction000393549
WBInteraction000394164
WBInteraction000394479
WBInteraction000397055
WBInteraction000398213
WBInteraction000398387
WBInteraction000400227
WBInteraction000402509
WBInteraction000406092
WBInteraction000406306
WBInteraction000406442
WBInteraction000406635
WBInteraction000407256
WBInteraction000407853
WBInteraction000411069
WBInteraction000411337
WBInteraction000413110
WBInteraction000414235
WBInteraction000414262
WBInteraction000415172
WBInteraction000416535
WBInteraction000417225
WBInteraction000417917
WBInteraction000418637
WBInteraction000418968
WBInteraction000422177
WBInteraction000422194
WBInteraction000422331
WBInteraction000422965
WBInteraction000428367
WBInteraction000433624
WBInteraction000435094
WBInteraction000439557
WBInteraction000441798
WBInteraction000442874
WBInteraction000444769
WBInteraction000446036
WBInteraction000450108
WBInteraction000450646
WBInteraction000453758
WBInteraction000453996
WBInteraction000460208
WBInteraction000462387
WBInteraction000542871
WBInteraction000542880
WBInteraction000546130
WBInteraction000580179
Map_infoMapIVPosition4.43243Error0.000423
PositivePositive_cloneBA#K4H
K07F5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00001023
WBPaper00001024
WBPaper00024312
WBPaper00032220
WBPaper00057218
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene