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WormBase Tree Display for Gene: WBGene00011870

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Name Class

WBGene00011870SMapS_parentSequenceT20G5
IdentityVersion1
NameSequence_nameT20G5.8
Molecular_nameT20G5.8
T20G5.8.1
CE00588
Other_nameCELE_T20G5.8Accession_evidenceNDBBX284603
Public_nameT20G5.8
DB_infoDatabaseAceViewgene3L289
WormQTLgeneWBGene00011870
WormFluxgeneWBGene00011870
NDBlocus_tagCELE_T20G5.8
NCBIgene188660
RefSeqproteinNM_066857.7
TrEMBLUniProtAccQ22614
UniProt_GCRPUniProtAccQ22614
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01500260
WBVar01507462
WBVar01499774
WBVar00101223
WBVar00406864
WBVar00855021
WBVar00855022
WBVar01267532
WBVar01267534
WBVar01498954
RNASeq_FPKM (74)
OrthologWBGene00142088Caenorhabditis brenneriFrom_analysisOMA
WBGene00085206Caenorhabditis remaneiFrom_analysisOMA
WBGene00085211Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CSP31.g20309Caenorhabditis uteleiaFrom_analysisWormBase-Compara
FL83_19536Caenorhabditis latensFrom_analysisWormBase-Compara
ParalogWBGene00011869Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABalpapppa; ABaraapapaa; pharyngeal cell; rectal epithelial cell; and rectum based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by fourteen chemicals including rotenone; Zidovudine; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST20G5.8
Corresponding_transcriptT20G5.8.1
Other_sequenceCSC01049_1
FD517327.1
Associated_featureWBsf645547
WBsf225681
Experimental_infoRNAi_resultWBRNAi00053667Inferred_automaticallyRNAi_primary
WBRNAi00018932Inferred_automaticallyRNAi_primary
WBRNAi00035725Inferred_automaticallyRNAi_primary
WBRNAi00063171Inferred_automaticallyRNAi_primary
WBRNAi00063170Inferred_automaticallyRNAi_primary
WBRNAi00006425Inferred_automaticallyRNAi_primary
Expr_patternExpr1023745
Expr1157222
Expr2006303
Expr2024523
Drives_constructWBCnstr00030321
Construct_productWBCnstr00030321
Microarray_results (19)
Expression_cluster (204)
InteractionWBInteraction000140363
WBInteraction000143958
WBInteraction000149601
WBInteraction000150026
WBInteraction000151353
WBInteraction000152762
WBInteraction000172211
WBInteraction000179739
WBInteraction000187271
WBInteraction000190628
WBInteraction000193960
WBInteraction000212792
WBInteraction000215838
WBInteraction000217076
WBInteraction000228023
WBInteraction000231372
WBInteraction000235428
WBInteraction000236192
WBInteraction000237651
WBInteraction000237822
WBInteraction000239613
WBInteraction000246216
WBInteraction000272100
WBInteraction000273281
WBInteraction000292739
WBInteraction000303562
WBInteraction000333775
WBInteraction000362451
WBInteraction000373202
WBInteraction000382287
WBInteraction000407030
WBInteraction000422389
WBInteraction000426294
WBInteraction000454990
WBInteraction000459704
Map_infoPositivePositive_cloneT20G5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII2.00897
ReferenceWBPaper00041771
MethodGene