WormBase Tree Display for Gene: WBGene00015971

WBGene00015971 SMap: S_parent: Sequence: C18E3
  Identity: Version: 2
    Name: CGC_name: swsn-2.2 Person_evidence: WBPerson407
            WBPerson552
      Sequence_name: C18E3.2
      Molecular_name: C18E3.2
        C18E3.2.1
        CE30249
      Other_name: CELE_C18E3.2 Accession_evidence: NDB BX284601
      Public_name: swsn-2.2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 11 Feb 2011 15:09:46 WBPerson2970 Name_change: CGC_name: swsn-2.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: swsn
    Allele (31)
    Strain: WBStrain00029672
      WBStrain00031318
      WBStrain00037543
    RNASeq_FPKM (74)
    GO_annotation (16)
    Contained_in_operon: CEOP1946
    Ortholog: WBGene00033166 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00062387 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00143177 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00137870 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00115103 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00192099 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00227896 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5325 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5214 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14791 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1084 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1967 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22024 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13408 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15318 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g18914 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16378 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_I.g1983 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold627.g6643 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01000.g17441 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21928 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002271 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13463 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11879 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10348600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g667 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrX_pilon.g20129 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245094 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263141 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000000648 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0025463 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-1835 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-080509-2 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-080215-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-070912-491 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11106 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11107 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11108 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914243 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1933621 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1933623 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:69289 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1311869 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1305406 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00044072 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00044585 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00020779 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010523 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: swsn-2.2 encodes a homolog of Swp73/BAF60, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; swsn-2.2 is probably required during mitosis of the T cells for asymmetric cell division. Paper_evidence: WBPaper00004350
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 01 Aug 2011 00:00:00
      Automated_description: Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in condensed chromosome; nuclear envelope; and nucleoplasm. Expressed in several structures, including HSNL and HSNR. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 11. Is an ortholog of human SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1); SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2); and SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Experimental_model: DOID:1574 Homo sapiens Paper_evidence: WBPaper00046494
          Curator_confirmed: WBPerson324
          Date_last_updated: 20 May 2019 00:00:00
    Potential_model: EFO:MONDO:0009506 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11107)
      DOID:0112372 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11106)
  Models_disease_asserted: WBDOannot00000665
  Molecular_info: Corresponding_CDS: C18E3.2
    Corresponding_transcript: C18E3.2.1
    Other_sequence (12)
    Associated_feature: WBsf643191
      WBsf643192
      WBsf656176
      WBsf983356
      WBsf217501
  Experimental_info: RNAi_result: WBRNAi00007940 Inferred_automatically: RNAi_primary
      WBRNAi00040936 Inferred_automatically: RNAi_primary
      WBRNAi00061241 Inferred_automatically: RNAi_primary
      WBRNAi00093893 Inferred_automatically: RNAi_primary
      WBRNAi00069103 Inferred_automatically: RNAi_primary
      WBRNAi00016521 Inferred_automatically: RNAi_primary
      WBRNAi00061240 Inferred_automatically: RNAi_primary
      WBRNAi00093974 Inferred_automatically: RNAi_primary
      WBRNAi00093943 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr16204
      Expr16205
      Expr1016633
      Expr1036825
      Expr1144983
      Expr2017157
      Expr2035293
    Drives_construct: WBCnstr00017369
      WBCnstr00028413
      WBCnstr00042800
    Construct_product: WBCnstr00028413
      WBCnstr00042800
    Regulate_expr_cluster: WBPaper00049018:swsn-2.2(RNAi)_downregulated
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049018:SWSN-2.2_interacting
    Antibody: WBAntibody00002683
    Microarray_results (24)
    Expression_cluster (135)
    Interaction: WBInteraction000032836
      WBInteraction000033272
      WBInteraction000034551
      WBInteraction000034696
      WBInteraction000034921
      WBInteraction000035293
      WBInteraction000035625
      WBInteraction000035973
      WBInteraction000036252
      WBInteraction000039084
      WBInteraction000040435
      WBInteraction000041358
      WBInteraction000041359
      WBInteraction000041433
      WBInteraction000042123
      WBInteraction000042558
      WBInteraction000043024
      WBInteraction000045227
      WBInteraction000046569
      WBInteraction000048422
      WBInteraction000048547
      WBInteraction000049707
      WBInteraction000049964
      WBInteraction000050390
      WBInteraction000114884
      WBInteraction000118692
      WBInteraction000148676
      WBInteraction000148677
      WBInteraction000158441
      WBInteraction000159342
      WBInteraction000159343
      WBInteraction000159344
      WBInteraction000159345
      WBInteraction000159346
      WBInteraction000159347
      WBInteraction000159348
      WBInteraction000159349
      WBInteraction000159350
      WBInteraction000159351
      WBInteraction000159352
      WBInteraction000161450
      WBInteraction000174364
      WBInteraction000174365
      WBInteraction000174366
      WBInteraction000176814
      WBInteraction000184436
      WBInteraction000190445
      WBInteraction000192649
      WBInteraction000195460
      WBInteraction000208752
      WBInteraction000216400
      WBInteraction000220981
      WBInteraction000230808
      WBInteraction000231186
      WBInteraction000235533
      WBInteraction000238232
      WBInteraction000241247
      WBInteraction000245024
      WBInteraction000246976
      WBInteraction000249238
      WBInteraction000250008
      WBInteraction000257350
      WBInteraction000257983
      WBInteraction000258480
      WBInteraction000264202
      WBInteraction000267695
      WBInteraction000273807
      WBInteraction000273867
      WBInteraction000276841
      WBInteraction000278713
      WBInteraction000281775
      WBInteraction000284833
      WBInteraction000285369
      WBInteraction000286860
      WBInteraction000290897
      WBInteraction000292225
      WBInteraction000292769
      WBInteraction000302170
      WBInteraction000302588
      WBInteraction000303408
      WBInteraction000303909
      WBInteraction000307684
      WBInteraction000320961
      WBInteraction000324508
      WBInteraction000327625
      WBInteraction000332978
      WBInteraction000334109
      WBInteraction000334454
      WBInteraction000338561
      WBInteraction000340586
      WBInteraction000348083
      WBInteraction000351875
      WBInteraction000354669
      WBInteraction000356410
      WBInteraction000358648
      WBInteraction000359490
      WBInteraction000374602
      WBInteraction000375024
      WBInteraction000375262
      WBInteraction000377844
      WBInteraction000380331
      WBInteraction000384897
      WBInteraction000388779
      WBInteraction000389463
      WBInteraction000389751
      WBInteraction000390365
      WBInteraction000393331
      WBInteraction000394908
      WBInteraction000397312
      WBInteraction000398600
      WBInteraction000402247
      WBInteraction000407756
      WBInteraction000411360
      WBInteraction000411739
      WBInteraction000417023
      WBInteraction000427847
      WBInteraction000428847
      WBInteraction000429255
      WBInteraction000430245
      WBInteraction000430553
      WBInteraction000438516
      WBInteraction000439242
      WBInteraction000441890
      WBInteraction000443663
      WBInteraction000445307
      WBInteraction000447010
      WBInteraction000449075
      WBInteraction000451059
      WBInteraction000456796
      WBInteraction000459602
      WBInteraction000461634
      WBInteraction000461661
      WBInteraction000527163
      WBInteraction000543875
      WBInteraction000559081
      WBInteraction000561087
      WBInteraction000561088
      WBInteraction000561089
      WBInteraction000561090
      WBInteraction000561091
      WBInteraction000561092
      WBInteraction000561093
      WBInteraction000561094
      WBInteraction000561095
      WBInteraction000561096
      WBInteraction000561097
      WBInteraction000561098
      WBInteraction000561099
      WBInteraction000561100
      WBInteraction000561101
      WBInteraction000561102
      WBInteraction000561103
      WBInteraction000561104
      WBInteraction000561105
      WBInteraction000561106
      WBInteraction000561107
      WBInteraction000561108
      WBInteraction000561109
      WBInteraction000561110
      WBInteraction000561111
      WBInteraction000561112
      WBInteraction000561113
      WBInteraction000561114
      WBInteraction000561115
      WBInteraction000561116
      WBInteraction000561117
      WBInteraction000561118
      WBInteraction000561119
      WBInteraction000561120
      WBInteraction000561121
      WBInteraction000561122
      WBInteraction000561123
      WBInteraction000561124
      WBInteraction000561125
      WBInteraction000561126
      WBInteraction000561127
      WBInteraction000561128
      WBInteraction000561129
      WBInteraction000561130
      WBInteraction000561131
      WBInteraction000561132
      WBInteraction000561133
      WBInteraction000561134
      WBInteraction000561135
      WBInteraction000561136
      WBInteraction000561137
      WBInteraction000561138
      WBInteraction000561139
      WBInteraction000561140
      WBInteraction000561141
      WBInteraction000561142
      WBInteraction000561143
      WBInteraction000561144
      WBInteraction000561145
      WBInteraction000561146
      WBInteraction000561147
      WBInteraction000561148
      WBInteraction000561149
      WBInteraction000561150
      WBInteraction000561151
      WBInteraction000561152
      WBInteraction000561153
      WBInteraction000561154
      WBInteraction000561155
      WBInteraction000561156
      WBInteraction000561157
      WBInteraction000561158
      WBInteraction000561159
      WBInteraction000561160
      WBInteraction000561161
      WBInteraction000561162
      WBInteraction000561163
      WBInteraction000561164
      WBInteraction000561165
      WBInteraction000561166
      WBInteraction000561167
      WBInteraction000561168
      WBInteraction000561169
      WBInteraction000561170
      WBInteraction000561171
      WBInteraction000561172
      WBInteraction000561173
      WBInteraction000561174
      WBInteraction000561175
      WBInteraction000561176
      WBInteraction000561177
      WBInteraction000561178
      WBInteraction000561179
      WBInteraction000561180
      WBInteraction000561181
      WBInteraction000561182
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      WBInteraction000561184
      WBInteraction000561185
      WBInteraction000561186
      WBInteraction000561187
      WBInteraction000561188
      WBInteraction000561189
      WBInteraction000561190
      WBInteraction000561191
      WBInteraction000561192
      WBInteraction000561193
      WBInteraction000561194
      WBInteraction000561195
      WBInteraction000561196
      WBInteraction000561197
      WBInteraction000561198
      WBInteraction000561199
      WBInteraction000561200
      WBInteraction000561201
      WBInteraction000561202
      WBInteraction000561203
      WBInteraction000561204
      WBInteraction000561205
      WBInteraction000561206
      WBInteraction000561207
      WBInteraction000561208
      WBInteraction000561209
      WBInteraction000561210
      WBInteraction000561211
      WBInteraction000561212
      WBInteraction000561213
      WBInteraction000561214
      WBInteraction000561215
      WBInteraction000561216
      WBInteraction000561217
      WBInteraction000561218
      WBInteraction000561219
      WBInteraction000561220
      WBInteraction000561221
      WBInteraction000561222
      WBInteraction000561223
      WBInteraction000561224
      WBInteraction000561225
      WBInteraction000561226
      WBInteraction000561227
      WBInteraction000561228
      WBInteraction000561229
      WBInteraction000561230
      WBInteraction000561231
      WBInteraction000561232
      WBInteraction000561233
      WBInteraction000561234
      WBInteraction000561235
      WBInteraction000561236
      WBInteraction000561237
      WBInteraction000561238
      WBInteraction000561239
      WBInteraction000561240
      WBInteraction000561241
      WBInteraction000561242
      WBInteraction000561243
      WBInteraction000561244
      WBInteraction000561245
      WBInteraction000561246
      WBInteraction000561247
      WBInteraction000561248
      WBInteraction000561249
      WBInteraction000561250
      WBInteraction000561251
      WBInteraction000561252
      WBInteraction000561253
      WBInteraction000561254
      WBInteraction000561255
      WBInteraction000561256
      WBInteraction000561257
      WBInteraction000561258
      WBInteraction000561259
      WBInteraction000561260
      WBInteraction000561261
      WBInteraction000561262
      WBInteraction000561263
      WBInteraction000561264
      WBInteraction000561265
      WBInteraction000561266
      WBInteraction000561267
      WBInteraction000561268
      WBInteraction000561269
      WBInteraction000561270
      WBInteraction000561271
      WBInteraction000561272
      WBInteraction000561273
      WBInteraction000561274
      WBInteraction000561275
      WBInteraction000561276
      WBInteraction000561277
      WBInteraction000561278
      WBInteraction000561279
      WBInteraction000561280
      WBInteraction000561281
      WBInteraction000561282
      WBInteraction000561283
      WBInteraction000561284
      WBInteraction000561285
      WBInteraction000561286
      WBInteraction000561287
      WBInteraction000561288
      WBInteraction000561289
      WBInteraction000561290
      WBInteraction000561291
      WBInteraction000565002
      WBInteraction000567998
      WBInteraction000568751
      WBInteraction000574773
      WBInteraction000577334
  Map_info: Map: I Position: -1.58056 Error: 0.006827
    Positive: Positive_clone: C18E3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031554
    WBPaper00038491
    WBPaper00043854
    WBPaper00046494
    WBPaper00049018
    WBPaper00055090
    WBPaper00060275
    WBPaper00065308
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene