WormBase Tree Display for Gene: WBGene00011871

WBGene00011871 SMap: S_parent: Sequence: T20G5
  Identity: Version: 1
    Name: Sequence_name: T20G5.9
      Molecular_name: T20G5.9
        T20G5.9.1
        CE34095
      Other_name: CELE_T20G5.9 Accession_evidence: NDB BX284603
      Public_name: T20G5.9
    DB_info: Database: AceView gene 3L299
        WormQTL gene WBGene00011871
        WormFlux gene WBGene00011871
        NDB locus_tag CELE_T20G5.9
        Panther gene CAEEL|WormBase=WBGene00011871|UniProtKB=Q22615
          family PTHR22959
        NCBI gene 188661
        RefSeq protein NM_066860.3
        TREEFAM TREEFAM_ID TF324615
        TrEMBL UniProtAcc Q22615
        UniProt_GCRP UniProtAcc Q22615
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (15)
    RNASeq_FPKM (74)
    GO_annotation: 00075796
      00075797
      00075798
      00075799
      00119090
    Contained_in_operon: CEOP3858
    Ortholog: WBGene00054927 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00031327 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00151839 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119690 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226132 Brugia malayi From_analysis: WormBase-Compara
      WBGene00230127 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5174 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2879 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17489 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20494 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g4739 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18280 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20307 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7290 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12182 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g536 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8072 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00228.g7409 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-T20G5.9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10211 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00155.g5825 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19528 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_22609 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009612 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08507 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12915 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30209700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8818 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245605 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00245607 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304951 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261266 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0034918 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1464 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:30258 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1925678 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306096 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in exon-exon junction complex disassembly. Predicted to be located in cytoplasm. Predicted to be part of exon-exon junction complex. Is an ortholog of human PYM1 (PYM homolog 1, exon junction complex associated factor). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T20G5.9
    Corresponding_CDS_history: T20G5.9:wp101
    Corresponding_transcript: T20G5.9.1
    Other_sequence (22)
    Associated_feature: WBsf993935
      WBsf225684
  Experimental_info: RNAi_result: WBRNAi00006380 Inferred_automatically: RNAi_primary
      WBRNAi00053668 Inferred_automatically: RNAi_primary
      WBRNAi00035726 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020220
      Expr1035231
      Expr1157223
      Expr2006304
      Expr2024524
    Microarray_results (21)
    Expression_cluster (97)
    Interaction: WBInteraction000181992
      WBInteraction000256298
      WBInteraction000267728
      WBInteraction000269904
      WBInteraction000287969
      WBInteraction000314799
      WBInteraction000328176
      WBInteraction000338409
      WBInteraction000350338
      WBInteraction000356742
      WBInteraction000392057
      WBInteraction000447080
  Map_info: Positive: Positive_clone: T20G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 2.01397
  Reference: WBPaper00028430
    WBPaper00038491
    WBPaper00055090
  Method: Gene