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WormBase Tree Display for Gene: WBGene00008237

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Name Class

WBGene00008237SMapS_parentSequenceC50F4
IdentityVersion2
NameCGC_namenstp-10Person_evidenceWBPerson2553
WBPerson261
Sequence_nameC50F4.14
Molecular_nameC50F4.14a
C50F4.14a.1
CE30910
C50F4.14b
CE44998
C50F4.14b.1
Other_nameCELE_C50F4.14Accession_evidenceNDBBX284605
Public_namenstp-10
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
211 Feb 2011 15:09:46WBPerson2970Name_changeCGC_namenstp-10
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnstp
Allele (29)
StrainWBStrain00032828
RNASeq_FPKM (74)
GO_annotation00007708
00007709
00091218
00091219
00091220
00091221
00091222
00091223
00091224
00091225
Contained_in_operonCEOP5232
OrthologWBGene00038553Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00160439Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127997Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00072532Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00058388Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00223139Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g168Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14846Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15711Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4768Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18308Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25480Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1943Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5029Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28242Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23828Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00257.g8004Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nstp-10Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15722Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00030.g1687Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17931Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017125Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02894Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5880Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50249100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15279Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241884Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00276940Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267670Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285853Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0265351Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041212-11Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:20197Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2443301Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1309463Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00011882Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00005025Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010442Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021637Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionThe C50F4.14 gene encodes a putative GDP-fucose transporter orthologous to the human GDP-FUCOSE TRANSPORTER 1 gene (LAD II; OMIM:605881), which when mutated leads to congenital disorder of glycosylation, type IIc.Paper_evidenceWBPaper00004674
Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable GDP-fucose transmembrane transporter activity and antiporter activity. Predicted to be involved in GDP-fucose import into Golgi lumen and protein O-linked fucosylation. Predicted to be located in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Is an ortholog of human SLC35C1 (solute carrier family 35 member C1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0070255Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:20197)
Molecular_infoCorresponding_CDSC50F4.14a
C50F4.14b
Corresponding_CDS_historyC50F4.14:wp80
C50F4.14a:wp229
C50F4.14b:wp229
Corresponding_transcriptC50F4.14a.1
C50F4.14b.1
Other_sequence (42)
Associated_featureWBsf652923
WBsf669242
WBsf669243
WBsf669244
WBsf669245
Experimental_infoRNAi_result (14)
Expr_patternChronogram340
Expr5560
Expr1024320
Expr1033580
Expr1146909
Expr2014495
Expr2032734
Drives_constructWBCnstr00003867
WBCnstr00033126
Construct_productWBCnstr00033126
Microarray_results (23)
Expression_cluster (96)
InteractionWBInteraction000150268
WBInteraction000161997
WBInteraction000161998
WBInteraction000208768
WBInteraction000228721
WBInteraction000237054
WBInteraction000246020
WBInteraction000256550
WBInteraction000261163
WBInteraction000289642
WBInteraction000290962
WBInteraction000321452
WBInteraction000334414
WBInteraction000336834
WBInteraction000340998
WBInteraction000349977
WBInteraction000375239
WBInteraction000376014
WBInteraction000376308
WBInteraction000376668
WBInteraction000378315
WBInteraction000378746
WBInteraction000382169
WBInteraction000392571
WBInteraction000399183
WBInteraction000399488
WBInteraction000400097
WBInteraction000413155
WBInteraction000413865
WBInteraction000416815
WBInteraction000435598
WBInteraction000444954
WBInteraction000444955
WBInteraction000447006
WBInteraction000447177
WBInteraction000460548
WBInteraction000464042
WBInteraction000464306
WBInteraction000469382
WBInteraction000470193
WBInteraction000470972
WBInteraction000472156
WBInteraction000473753
WBInteraction000474161
WBInteraction000474435
WBInteraction000474614
WBInteraction000580587
Map_infoMapVPosition2.05035Error0.00051
PositivePositive_cloneC50F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029024
WBPaper00037686
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene