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WormBase Tree Display for Gene: WBGene00008035

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Name Class

WBGene00008035SMapS_parentSequenceC39E9
IdentityVersion1
NameSequence_nameC39E9.12
Molecular_nameC39E9.12
C39E9.12.1
CE39690
Other_nameCELE_C39E9.12Accession_evidenceNDBBX284604
Public_nameC39E9.12
DB_infoDatabaseAceViewgene4N859
WormQTLgeneWBGene00008035
WormFluxgeneWBGene00008035
NDBlocus_tagCELE_C39E9.12
NCBIgene178258
RefSeqproteinNM_070115.10
TrEMBLUniProtAccQ18546
UniProt_GCRPUniProtAccQ18546
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (26)
RNASeq_FPKM (74)
Contained_in_operonCEOP4528
OrthologWBGene00025013Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00062726Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00162041Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00127930Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00103936Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00154661Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g8967Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g15247Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13815Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6969Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26730Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14400Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g16131Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4652Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2356Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00598.g12637Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-C39E9.12Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold587.g4914Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00041.g2194Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_014494Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40145400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g12217Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00012769Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017620Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplapaaapa; ABplapppapp; ABprapaaapa; ciliated neurons; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by fifteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SAP domain and SAP domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC39E9.12
Corresponding_CDS_historyC39E9.12:wp154
Corresponding_transcriptC39E9.12.1
Other_sequenceCJC18214_1
CR09383
CRC07866_1
CJC00842_1
CR09384
CGC00913_1
Associated_featureWBsf646510
WBsf998328
WBsf229384
Experimental_infoRNAi_resultWBRNAi00042217Inferred_automaticallyRNAi_primary
WBRNAi00007821Inferred_automaticallyRNAi_primary
WBRNAi00011787Inferred_automaticallyRNAi_primary
Expr_patternExpr1022928
Expr1033493
Expr1146208
Expr2001540
Expr2019761
Drives_constructWBCnstr00033288
Construct_productWBCnstr00033288
Microarray_results (19)
Expression_cluster (154)
InteractionWBInteraction000105279
WBInteraction000122438
WBInteraction000143588
WBInteraction000149154
WBInteraction000161697
WBInteraction000170532
WBInteraction000172269
WBInteraction000177557
WBInteraction000181332
WBInteraction000190540
WBInteraction000197899
WBInteraction000198257
WBInteraction000199497
WBInteraction000207154
WBInteraction000210146
WBInteraction000214281
WBInteraction000221400
WBInteraction000221818
WBInteraction000229547
WBInteraction000231041
WBInteraction000231070
WBInteraction000240340
WBInteraction000241244
WBInteraction000241686
WBInteraction000242419
WBInteraction000244728
WBInteraction000245163
WBInteraction000251653
WBInteraction000252678
WBInteraction000255437
WBInteraction000255717
WBInteraction000262074
WBInteraction000263186
WBInteraction000265506
WBInteraction000265663
WBInteraction000266279
WBInteraction000267105
WBInteraction000269706
WBInteraction000274969
WBInteraction000275885
WBInteraction000277100
WBInteraction000290069
WBInteraction000292351
WBInteraction000295732
WBInteraction000297033
WBInteraction000298713
WBInteraction000307225
WBInteraction000310353
WBInteraction000315593
WBInteraction000319439
WBInteraction000320845
WBInteraction000323463
WBInteraction000324763
WBInteraction000328081
WBInteraction000330741
WBInteraction000332375
WBInteraction000340099
WBInteraction000340481
WBInteraction000342761
WBInteraction000343267
WBInteraction000344831
WBInteraction000347850
WBInteraction000348797
WBInteraction000351397
WBInteraction000353253
WBInteraction000353549
WBInteraction000354281
WBInteraction000355217
WBInteraction000355291
WBInteraction000360106
WBInteraction000360381
WBInteraction000360387
WBInteraction000364389
WBInteraction000364661
WBInteraction000371071
WBInteraction000373589
WBInteraction000376052
WBInteraction000378749
WBInteraction000381029
WBInteraction000381254
WBInteraction000383403
WBInteraction000386452
WBInteraction000405017
WBInteraction000410867
WBInteraction000424624
WBInteraction000424973
WBInteraction000427643
WBInteraction000427728
WBInteraction000427795
WBInteraction000431361
WBInteraction000432985
WBInteraction000435498
WBInteraction000442953
WBInteraction000443137
WBInteraction000449961
WBInteraction000450418
WBInteraction000452174
WBInteraction000456412
WBInteraction000458876
WBInteraction000460806
WBInteraction000539380
WBInteraction000582442
Map_infoPositivePositive_cloneC39E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV7.85328
MethodGene