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WormBase Tree Display for Gene: WBGene00004184

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Name Class

WBGene00004184EvidenceAccession_evidenceEMBLAF063401
SMapS_parentSequenceT19D2
IdentityVersion4
NameCGC_nameptp-4A2Author_evidenceWBPerson1352
Sequence_nameT19D2.2
Molecular_nameT19D2.2
T19D2.2.1
CE07515
T19D2.2.2
T19D2.2.3
Other_nameprl-1
CELE_T19D2.2Accession_evidenceNDBBX284606
Public_nameptp-4A2
DB_infoDatabaseAceViewgeneXE560
WormQTLgeneWBGene00004184
WormFluxgeneWBGene00004184
NDBlocus_tagCELE_T19D2.2
PanthergeneCAEEL|WormBase=WBGene00004184|UniProtKB=G5EG43
familyPTHR23339
NCBIgene180677
RefSeqproteinNM_001392757.1
TREEFAMTREEFAM_IDTF313384
TrEMBLUniProtAccG5EG43
UniProt_GCRPUniProtAccG5EG43
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
206 Sep 2013 11:21:16WBPerson2970Name_changeOther_nameprl-1
306 Mar 2018 14:38:47WBPerson4025EventSplit_intoWBGene00303102
410 Jul 2023 23:47:10WBPerson51134Name_changeCGC_nameptp-4A2
Split_intoWBGene00303102
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classptp
Allele (48)
RNASeq_FPKM (74)
GO_annotation00019469
00019470
00019471
00112427
00112428
OrthologWBGene00051904Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00034858Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
WormBase-Compara
WBGene00143501Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00124383Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00089576Pristionchus pacificusFrom_analysisOMA
WBGene00226106Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2327Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9621Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11988Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10406Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g466Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15980Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g353Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9472Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26587Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20944Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00329.g9290Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13355.g24189Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-T19D2.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18249Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00336.g9641Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00753Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024177Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01142Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6741Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0263400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18842Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240397Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00301213Trichuris murisFrom_analysisWormBase-Compara
WBGene00301280Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0024734Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041114-111Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-2220Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040930-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041121-11Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-2635Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9634Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9635Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9636Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1277096Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1277117Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1277098Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:61970Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:619786Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1308687Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00000383Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020444Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein tyrosine phosphatase activity. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human PTP4A2 (protein tyrosine phosphatase 4A2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST19D2.2
Corresponding_CDS_historyT19D2.2a:wp264
T19D2.2b:wp264
T19D2.2c:wp264
Corresponding_transcriptT19D2.2.1
T19D2.2.2
T19D2.2.3
Other_sequence (69)
Associated_featureWBsf718556
WBsf718557
WBsf237231
WBsf237232
WBsf237233
Experimental_infoRNAi_result (16)
Expr_patternExpr1012519
Expr1032044
Expr1157107
Expr2006265
Expr2024483
Drives_constructWBCnstr00037930
Construct_productWBCnstr00037930
AntibodyWBAntibody00003049
Microarray_results (25)
Expression_cluster (131)
InteractionWBInteraction000115580
WBInteraction000116393
WBInteraction000122821
WBInteraction000122822
WBInteraction000122823
WBInteraction000173898
WBInteraction000174497
WBInteraction000283055
WBInteraction000289258
WBInteraction000361641
WBInteraction000456755
WBInteraction000568200
Map_infoMapXPosition-9.01614Error0.069766
PositivePositive_cloneT19D2Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00023259
WBPaper00038491
WBPaper00038792
WBPaper00040360
WBPaper00055090
WBPaper00065090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
The association of T19D2.2 with prl-1 is incorrect
MethodGene