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WormBase Tree Display for Gene: WBGene00003997

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Name Class

WBGene00003997SMapS_parentSequenceCHROMOSOME_X
IdentityVersion1
NameCGC_namepgp-3Person_evidenceWBPerson490
Sequence_nameZK455.7
Molecular_nameZK455.7
ZK455.7.1
CE03818
Other_namecepgpCAccession_evidenceEMBLX65055
CELE_ZK455.7Accession_evidenceNDBBX284606
Public_namepgp-3
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpgp
Allele (77)
Legacy_information[C.elegansII] pk18 : deletion derived from pk30tci, increased sensitivity to colchicine and to chloroquine; gross phenotype WT. Cloned: encodes 1254 aa P-glycoprotein, 61-65% identical to mammalian P-glycoproteins. Transcripts present throughout development; pgp-1:lacZ expressed in intestine, throughout development. Tagged PGP-3 detected in apical membranes of gut and of excretory cell. [Broeks et al. 1995; NL]
StrainWBStrain00028887
WBStrain00028888
WBStrain00028891
WBStrain00033025
WBStrain00037266
WBStrain00004731
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00023572Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00023573Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00023575Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00023577Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00026762Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00028069Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00033821Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034135Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00034271Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037005Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037006Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00037161Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037162Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037165Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00161154Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00058300Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00123145Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00114765Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00231570Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2827Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12439Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g13424Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g3644Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7230Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18762Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15828Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10058Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2856Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17072Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g2793Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28787Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12630Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00158.g5875Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g23203Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold31.g135Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00458.g11649Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01130Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023779Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02254Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11074Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g12160Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g17150Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18578Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18582Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19718Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19721Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5577Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0087600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0087800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_X0087900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20058Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00258292Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000001692Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoInspector
PhylomeDB
SonicParanoid
FB:FBgn0004513Drosophila melanogasterFrom_analysisOMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-050517-14Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-050517-13Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-030131-6414Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-080204-52Danio rerioFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:40Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:45Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:42Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
HGNC:46Homo sapiensFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:97568Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:97569Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:97570Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:1351619Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
MGI:1924956Mus musculusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:3318Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:620248Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:619930Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
RGD:1566342Rattus norvegicusFrom_analysisOMA
OrthoFinder
PhylomeDB
Paralog (23)
Structured_descriptionConcise_descriptionpgp-3 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; with PGP-1, PGP-3 is required for defense against the pathogenic Pseudomonas aeruginosa strain PA14, and may facilitate ATP-dependent efflux of the toxic phenazine compounds produced by the bacteria; PGP-3 is also required for resistance to colchicine and chloroquine; PGP-3 is expressed in the apical membranes of the excretory cell and the intestinal cells.Paper_evidenceWBPaper00002180
WBPaper00003366
WBPaper00003925
WBPaper00004651
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated03 Apr 2014 00:00:00
Automated_descriptionPredicted to enable ATPase-coupled transmembrane transporter activity and efflux transmembrane transporter activity. Involved in defense response to Gram-negative bacterium; innate immune response; and stress response to cadmium ion. Located in apical plasma membrane. Expressed in excretory canal; excretory cell; intestinal cell; intestine; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); and intrahepatic cholestasis (multiple). Is an ortholog of several human genes including ABCB1 (ATP binding cassette subfamily B member 1); ABCB11 (ATP binding cassette subfamily B member 11); and ABCB4 (ATP binding cassette subfamily B member 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (41)
Molecular_infoCorresponding_CDSZK455.7
Corresponding_transcriptZK455.7.1
Other_sequence (21)
Associated_featureWBsf1006975
Experimental_infoRNAi_resultWBRNAi00059437Inferred_automaticallyRNAi_primary
WBRNAi00022018Inferred_automaticallyRNAi_primary
WBRNAi00014821Inferred_automaticallyRNAi_primary
WBRNAi00001488Inferred_automaticallyRNAi_primary
Expr_pattern (13)
Drives_constructWBCnstr00002142
WBCnstr00010331
WBCnstr00011338
WBCnstr00011339
WBCnstr00012125
WBCnstr00012126
WBCnstr00012634
WBCnstr00015310
WBCnstr00035753
Construct_productWBCnstr00012634
WBCnstr00014565
WBCnstr00014566
WBCnstr00035753
AntibodyWBAntibody00000095
Microarray_results (17)
Expression_cluster (180)
InteractionWBInteraction000126398
WBInteraction000138051
WBInteraction000138053
WBInteraction000143144
WBInteraction000184977
WBInteraction000215689
WBInteraction000215690
WBInteraction000216316
WBInteraction000231449
WBInteraction000238579
WBInteraction000246779
WBInteraction000250489
WBInteraction000298883
WBInteraction000327365
WBInteraction000353386
WBInteraction000361338
WBInteraction000364168
WBInteraction000367809
WBInteraction000369663
WBInteraction000392908
WBInteraction000394423
WBInteraction000417860
WBInteraction000426948
WBInteraction000431488
WBInteraction000434444
WBInteraction000451557
WBInteraction000467095
WBInteraction000474588
WBInteraction000504105
WBInteraction000520631
WBInteraction000524442
WBInteraction000536776
WBInteraction000557017
WBInteraction000580243
Map_infoMapXPosition3.16596Error0.03869
PositivePositive_clonePB#CPG4
ZK455Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (46)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene