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WormBase Tree Display for Gene: WBGene00003796

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Name Class

WBGene00003796SMapS_parentSequenceZK328
IdentityVersion1
NameCGC_namenpp-10Person_evidenceWBPerson1780
Sequence_nameZK328.5
Molecular_nameZK328.5a
ZK328.5a.1
CE44281
ZK328.5b
CE44292
ZK328.5c
CE44327
ZK328.5b.1
ZK328.5c.1
Other_nameNup96Paper_evidenceWBPaper00026834
Nup98Paper_evidenceWBPaper00026834
CELE_ZK328.5Accession_evidenceNDBBX284603
Public_namenpp-10
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnpp
Allele (84)
Possibly_affected_byWBVar02154080
StrainWBStrain00035673
WBStrain00022364
WBStrain00055401
WBStrain00054175
RNASeq_FPKM (74)
GO_annotation (51)
OrthologWBGene00055518Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00030693Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00143710Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00235019Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5368Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g608Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11907Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g11909Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13985Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3180Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23142Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10040Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4692Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18732Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g435Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g18081Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00134.g5266Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00134.g5267Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13368.g24197Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-npp-10Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold594.g5228Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00229.g7534Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16481Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010682Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09632Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11147Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30145300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7844Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00122503Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00210454Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00210603Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00245308Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00107476Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00258906Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285458Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003060Saccharomyces cerevisiaeFrom_analysisHieranoid
OMA
OrthoFinder
Panther
SonicParanoid
SGD:S000001551Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
SGD:S000004650Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
OrthoInspector
Panther
FB:FBgn0039120Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040426-1180Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:8068Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:109404Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:71033Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionnpp-10 is orthologous to the human gene NUCLEOPORIN, 98-KD (NUP98; OMIM:601021), which can promote leukemias (myelodysplastic syndromes, AML, or CML) when chromosomally rearranged.Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables RNA binding activity. Involved in embryo development; organelle organization; and protein localization to organelle. Located in P granule; kinetochore; and nuclear envelope. Part of nuclear pore. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia. Is an ortholog of human NUP98 (nucleoporin 98 and 96 precursor).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:5603Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:8068)
Molecular_infoCorresponding_CDSZK328.5a
ZK328.5b
ZK328.5c
Corresponding_CDS_historyZK328.5a:wp101
ZK328.5a:wp209
ZK328.5b:wp101
ZK328.5b:wp209
Corresponding_transcriptZK328.5a.1
ZK328.5b.1
ZK328.5c.1
Other_sequence (19)
Associated_featureWBsf655439
WBsf666428
WBsf666948
WBsf666949
WBsf226748
WBsf226749
WBsf226750
WBsf226751
Experimental_infoRNAi_result (21)
Expr_patternExpr9020
Expr9024
Expr1026045
Expr1031782
Expr1162768
Expr2014370
Expr2032611
Drives_constructWBCnstr00035863
WBCnstr00042404
Construct_productWBCnstr00006025
WBCnstr00013677
WBCnstr00035863
WBCnstr00042404
AntibodyWBAntibody00001025
WBAntibody00001887
WBAntibody00001888
WBAntibody00001893
WBAntibody00002138
WBAntibody00002139
Microarray_results (32)
Expression_cluster (141)
InteractionWBInteraction000034006
WBInteraction000034197
WBInteraction000034433
WBInteraction000034461
WBInteraction000034727
WBInteraction000035013
WBInteraction000035855
WBInteraction000036230
WBInteraction000036612
WBInteraction000036613
WBInteraction000036614
WBInteraction000036699
WBInteraction000036700
WBInteraction000036868
WBInteraction000037341
WBInteraction000037342
WBInteraction000037432
WBInteraction000038107
WBInteraction000038792
WBInteraction000039082
WBInteraction000039101
WBInteraction000039571
WBInteraction000042056
WBInteraction000042732
WBInteraction000042990
WBInteraction000043380
WBInteraction000045227
WBInteraction000045475
WBInteraction000045550
WBInteraction000045551
WBInteraction000045552
WBInteraction000045737
WBInteraction000046150
WBInteraction000046250
WBInteraction000046251
WBInteraction000046252
WBInteraction000046253
WBInteraction000046254
WBInteraction000046255
WBInteraction000046256
WBInteraction000046257
WBInteraction000046258
WBInteraction000046259
WBInteraction000046260
WBInteraction000046261
WBInteraction000046262
WBInteraction000046847
WBInteraction000047744
WBInteraction000103990
WBInteraction000105479
WBInteraction000106969
WBInteraction000107359
WBInteraction000107360
WBInteraction000108934
WBInteraction000108935
WBInteraction000108936
WBInteraction000121019
WBInteraction000122811
WBInteraction000123552
WBInteraction000128624
WBInteraction000128829
WBInteraction000133830
WBInteraction000135277
WBInteraction000136554
WBInteraction000138830
WBInteraction000143889
WBInteraction000145948
WBInteraction000146236
WBInteraction000147463
WBInteraction000147466
WBInteraction000148629
WBInteraction000151736
WBInteraction000152719
WBInteraction000152972
WBInteraction000161917
WBInteraction000162248
WBInteraction000162369
WBInteraction000165085
WBInteraction000167286
WBInteraction000167294
WBInteraction000167416
WBInteraction000167418
WBInteraction000167514
WBInteraction000174791
WBInteraction000185541
WBInteraction000189351
WBInteraction000193155
WBInteraction000195364
WBInteraction000203529
WBInteraction000207195
WBInteraction000208350
WBInteraction000213243
WBInteraction000223031
WBInteraction000225216
WBInteraction000227530
WBInteraction000228191
WBInteraction000234000
WBInteraction000236939
WBInteraction000240929
WBInteraction000241631
WBInteraction000244546
WBInteraction000249385
WBInteraction000252089
WBInteraction000253945
WBInteraction000254731
WBInteraction000261642
WBInteraction000266647
WBInteraction000274367
WBInteraction000276867
WBInteraction000278871
WBInteraction000280735
WBInteraction000283869
WBInteraction000287089
WBInteraction000288472
WBInteraction000291441
WBInteraction000298010
WBInteraction000305777
WBInteraction000315934
WBInteraction000316450
WBInteraction000319556
WBInteraction000320871
WBInteraction000326871
WBInteraction000344651
WBInteraction000344712
WBInteraction000352179
WBInteraction000353776
WBInteraction000354227
WBInteraction000355311
WBInteraction000356834
WBInteraction000358954
WBInteraction000362500
WBInteraction000362849
WBInteraction000364818
WBInteraction000368422
WBInteraction000374739
WBInteraction000384570
WBInteraction000392209
WBInteraction000397679
WBInteraction000400435
WBInteraction000402384
WBInteraction000403245
WBInteraction000406359
WBInteraction000410326
WBInteraction000412551
WBInteraction000415732
WBInteraction000420945
WBInteraction000424273
WBInteraction000430574
WBInteraction000438995
WBInteraction000439179
WBInteraction000439450
WBInteraction000441036
WBInteraction000443584
WBInteraction000443767
WBInteraction000448526
WBInteraction000450766
WBInteraction000456323
WBInteraction000457230
WBInteraction000468990
WBInteraction000475182
WBInteraction000502134
WBInteraction000502135
WBInteraction000502599
WBInteraction000504355
WBInteraction000504359
WBInteraction000519272
WBInteraction000523072
WBInteraction000523073
WBInteraction000523074
WBInteraction000523075
WBInteraction000523076
WBInteraction000523077
WBInteraction000523078
WBInteraction000523079
WBInteraction000551896
WBInteraction000558256
WBInteraction000558405
WBInteraction000560229
WBInteraction000569446
WBInteraction000570229
WBInteraction000570943
WBInteraction000577168
WBInteraction000577245
Map_infoMapIIIPosition-1.42704Error0.000206
PositivePositive_cloneZK328Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4248
4546
Pseudo_map_position
Reference (19)
RemarkSequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene