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WormBase Tree Display for Gene: WBGene00002018

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Name Class

WBGene00002018SMapS_parentSequenceY46H3A
IdentityVersion1
NameCGC_namehsp-16.41Person_evidenceWBPerson36
Sequence_nameY46H3A.2
Molecular_nameY46H3A.2
Y46H3A.2.1
CE22003
Other_namehsp-16
CELE_Y46H3A.2Accession_evidenceNDBBX284605
Public_namehsp-16.41
DB_infoDatabaseAceViewgene5C283
WormQTLgeneWBGene00002018
WormFluxgeneWBGene00002018
NDBlocus_tagCELE_Y46H3A.2
PanthergeneCAEEL|WormBase=WBGene00002018|UniProtKB=P06581
familyPTHR45640
NCBIgene178660
RefSeqproteinNM_182316.5
SwissProtUniProtAccP06581
UniProt_GCRPUniProtAccP06581
OMIMgene123580
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhsp
Allele (21)
Strain (15)
In_clusterHSP16B
RNASeq_FPKM (74)
GO_annotation (11)
OrthologWBGene00027234Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00052625Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00038448Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00140961Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00149500Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00154236Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00151214Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155603Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00126654Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00124823Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00101797Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00101796Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00091037Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00027246Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00073752Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WBGene00068605Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WBGene00073755Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00068608Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00226306Brugia malayiFrom_analysisWormBase-Compara
WBGene00226851Brugia malayiFrom_analysisWormBase-Compara
WBGene00236790Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12732Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g12776Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g12783Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g12785Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2043Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15082Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g5545Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g5547Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4574Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g5092Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g17962Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18638Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5549Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g10286Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14653Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14657Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g14875Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g16154Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6663Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g22417Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g23489Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8365Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8373Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17873Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g21397Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g23637Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g20090Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20092Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20529Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g20543Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold575.g4426Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g16839Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19838Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00279.g8578Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01089.g18311Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06367.g36441Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_24822Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018404Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_10087200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50235600Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50235800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50329000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50329200Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50329800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50330100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50355400Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50359400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g13310Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00236859Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00257141Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00257259Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00258086Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261172Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00265225Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00265337Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288111Trichuris murisFrom_analysisWormBase-Compara
WBGene00289300Trichuris murisFrom_analysisWormBase-Compara
WBGene00294628Trichuris murisFrom_analysisWormBase-Compara
WBGene00294630Trichuris murisFrom_analysisWormBase-Compara
WBGene00296278Trichuris murisFrom_analysisWormBase-Compara
WBGene00296279Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0011296Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
FB:FBgn0001229Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
FB:FBgn0001227Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
FB:FBgn0001224Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
FB:FBgn0001223Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
Panther
ZFIN:ZDB-GENE-020508-1Danio rerioFrom_analysisEnsEMBL-Compara
OMA
Panther
HGNC:2388Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
Panther
HGNC:CRYAA2Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
Panther
RGD:2413Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
Paralog (17)
Structured_description (2)
Disease_infoPotential_modelDOID:0110266Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:2388)
Disease_relevanceC. elegans is an effective model system to study heat-related pathologies like heat stroke; in elegans, the heat-shock transcription factor, after activation, induces the expression of other small heat shock proteins (sHSP); HSP-16.1 has a protective effect against heat-induced necrosis; HSP-16.1 localizes to the golgi and functions together with the PMR-1/PMR1 Ca2+ and Mn2+ transporting ATPase, and NUCB-1/Nucleobindin1, a golgi-located calcium-buffering protein, to maintain calcium homeostasis, under heat stroke; overexpresiion of pmr-1/PMR1 is sufficient to promote survival after heat stroke, bypassing both HSF-1 and HSP-16.1, indicating that PMR-1/PMR1 functions downstream of both these genes; also, the sHSPs, HSP-16.1, HSP-16.41 and DNJ-19 are required for an acquired tolerance to heat stroke.Homo sapiensPaper_evidenceWBPaper00041564
Curator_confirmedWBPerson324
Date_last_updated29 May 2013 00:00:00
Molecular_infoCorresponding_CDSY46H3A.2
Corresponding_transcriptY46H3A.2.1
Other_sequence (61)
Associated_featureWBsf646680
WBsf646681
WBsf919559
WBsf919560
WBsf919561
WBsf919562
WBsf231437
WBsf231438
WBsf231439
Experimental_infoRNAi_resultWBRNAi00027603Inferred_automaticallyRNAi_primary
WBRNAi00056699Inferred_automaticallyRNAi_primary
WBRNAi00106383Inferred_automaticallyRNAi_primary
WBRNAi00076794Inferred_automaticallyRNAi_primary
WBRNAi00070131Inferred_automaticallyRNAi_primary
WBRNAi00020673Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_construct (176)
Construct_productWBCnstr00010254
WBCnstr00010255
WBCnstr00017025
WBCnstr00036518
WBCnstr00042209
AntibodyWBAntibody00000051
WBAntibody00001859
Microarray_results (17)
Expression_cluster (413)
InteractionWBInteraction000005557
WBInteraction000005684
WBInteraction000005860
WBInteraction000242065
WBInteraction000242066
WBInteraction000248874
WBInteraction000254379
WBInteraction000257446
WBInteraction000275881
WBInteraction000275882
WBInteraction000290966
WBInteraction000290967
WBInteraction000297579
WBInteraction000297659
WBInteraction000328649
WBInteraction000331626
WBInteraction000349209
WBInteraction000352603
WBInteraction000366397
WBInteraction000379250
WBInteraction000387211
WBInteraction000406727
WBInteraction000427633
WBInteraction000462983
WBInteraction000465105
WBInteraction000469572
WBInteraction000472365
WBInteraction000473142
WBInteraction000501583
WBInteraction000501584
WBInteraction000501585
WBInteraction000501586
WBInteraction000503396
WBInteraction000503900
WBInteraction000536828
WBInteraction000541228
WBInteraction000542656
WBInteraction000548717
WBInteraction000548808
WBInteraction000555461
WBInteraction000556180
WBInteraction000560060
WBInteraction000566973
WBInteraction000578344
WBInteraction000580078
Map_infoMapVPosition-17.4232Error0.07866
PositivePositive_cloneY46H3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4418
Pseudo_map_position
Reference (69)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene