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WormBase Tree Display for Gene: WBGene00016162

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Name Class

WBGene00016162SMapS_parentSequenceC27D6
IdentityVersion2
NameCGC_namecrh-2Person_evidenceWBPerson625
WBPerson567
WBPerson2812
Sequence_nameC27D6.4
Molecular_name (12)
Other_nameCELE_C27D6.4Accession_evidenceNDBBX284602
Public_namecrh-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
226 Apr 2011 16:30:24WBPerson2970Name_changeCGC_namecrh-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcrh
Allele (122)
StrainWBStrain00002482
WBStrain00003552
WBStrain00037697
RNASeq_FPKM (74)
GO_annotation (11)
Ortholog (31)
ParalogWBGene00000222Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00000793Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00002783Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Involved in defense response to Gram-negative bacterium; positive regulation of dauer entry; and regulation of gene expression. Predicted to be located in nucleus. Expressed in body wall musculature; seam cell; spermatheca; and tail. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 16; prostate adenocarcinoma; and prostate carcinoma in situ. Is an ortholog of human CREB3L1 (cAMP responsive element binding protein 3 like 1) and CREB3L2 (cAMP responsive element binding protein 3 like 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110345Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18856)
DOID:8634Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18854)
DOID:2526Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18854)
Molecular_infoCorresponding_CDSC27D6.4a
C27D6.4b
C27D6.4c
C27D6.4d
Corresponding_CDS_historyC27D6.4a:wp88
C27D6.4b:wp88
C27D6.4c:wp88
C27D6.4c:wp238
Corresponding_transcriptC27D6.4a.1
C27D6.4b.1
C27D6.4c.1
C27D6.4d.1
Other_sequence (13)
Associated_feature (22)
Gene_product_bindsWBsf977574
WBsf977575
WBsf977576
WBsf977577
WBsf977578
WBsf977579
WBsf977580
WBsf977581
WBsf977582
WBsf977583
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WBsf977600
WBsf977601
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WBsf977666
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WBsf977947
WBsf977948
WBsf977949
Transcription_factorWBTranscriptionFactor000319
Experimental_infoRNAi_resultWBRNAi00011256Inferred_automaticallyRNAi_primary
WBRNAi00011620Inferred_automaticallyRNAi_primary
WBRNAi00092881Inferred_automaticallyRNAi_primary
WBRNAi00041346Inferred_automaticallyRNAi_primary
WBRNAi00011257Inferred_automaticallyRNAi_primary
WBRNAi00041345Inferred_automaticallyRNAi_primary
WBRNAi00092155Inferred_automaticallyRNAi_primary
WBRNAi00090568Inferred_automaticallyRNAi_primary
Expr_pattern (13)
Drives_constructWBCnstr00003072
WBCnstr00004526
WBCnstr00004531
WBCnstr00028283
Construct_productWBCnstr00016813
WBCnstr00017350
WBCnstr00028283
Microarray_results (43)
Expression_cluster (97)
Interaction (35)
Map_infoMapIIPosition-1.94895Error0.002445
PositivePositive_cloneC27D6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (10)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene