WormBase Tree Display for Gene: WBGene00018893
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| WBGene00018893 | SMap | S_parent | Sequence | F55F8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | wdr-12 | Paper_evidence | WBPaper00040589 | |||||
| Sequence_name | F55F8.5 | ||||||||
| Molecular_name | F55F8.5 | ||||||||
| F55F8.5.1 | |||||||||
| CE11196 | |||||||||
| Other_name | tag-345 | ||||||||
| let-379 | Person_evidence | WBPerson533 | |||||||
| CELE_F55F8.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | wdr-12 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jun 2005 09:45:25 | WBPerson2970 | Name_change | CGC_name | tag-345 | ||||
| 3 | 09 Feb 2015 11:37:37 | WBPerson2970 | Event | Acquires_merge | WBGene00002599 | ||||
| Name_change | CGC_name | wdr-12 | |||||||
| Other_name | let-379 | ||||||||
| Acquires_merge | WBGene00002599 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | wdr | ||||||||
| Reference_allele | WBVar00146447 | ||||||||
| Allele (24) | |||||||||
| Legacy_information | [McDowall JS] Early larval lethal | ||||||||
| [C.elegansII] h127 : embryonic or early larval lethal. OA2: h186, h712. [Howell et al. 1987; KR] | |||||||||
| Strain | WBStrain00023705 | ||||||||
| WBStrain00036280 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP1276 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00015470 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ribonucleoprotein complex binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex. Is an ortholog of human WDR12 (WD repeat domain 12). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55F8.5 | |||||||
| Corresponding_transcript | F55F8.5.1 | ||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf219467 | ||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1028391 | ||||||||
| Expr1038152 | |||||||||
| Expr1152314 | |||||||||
| Expr2018051 | |||||||||
| Expr2036188 | |||||||||
| Drives_construct | WBCnstr00037830 | ||||||||
| Construct_product | WBCnstr00037830 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (139) | |||||||||
| Interaction (248) | |||||||||
| Map_info | Map | I | Position | 0.299521 | Error | 0.001362 | |||
| Positive | Positive_clone | F55F8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Negative | Negative_clone | C03E6 | |||||||
| C04F1 | |||||||||
| C07F10 | |||||||||
| C30B6 | |||||||||
| C32E7 | |||||||||
| C53A11 | |||||||||
| Mapping_data | 2_point | 2543 | |||||||
| Multi_point | 5278 | ||||||||
| 5575 | |||||||||
| 1029 | |||||||||
| Pos_neg_data (15) | |||||||||
| Pseudo_map_position | |||||||||
| Reference (8) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [McDowall JS] Extrachromosomal arrays containing three cosmids generated, then manipulated genetically. | |||||||||
| Method | Gene |
