WormBase Tree Display for Gene: WBGene00006697
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WBGene00006697 | SMap | S_parent | Sequence | Y92C3B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | uaf-1 | Person_evidence | WBPerson71 | |||||
Sequence_name | Y92C3B.2 | ||||||||
Molecular_name | Y92C3B.2a | ||||||||
Y92C3B.2a.1 | |||||||||
CE27339 | |||||||||
Y92C3B.2b | |||||||||
CE25626 | |||||||||
Y92C3B.2b.1 | |||||||||
Other_name | Y92C3B.a | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y92C3B.b | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y92C3B.2 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | uaf-1 | ||||||||
DB_info | Database | AceView | gene | 3C154 | |||||
WormQTL | gene | WBGene00006697 | |||||||
WormFlux | gene | WBGene00006697 | |||||||
NDB | locus_tag | CELE_Y92C3B.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006697|UniProtKB=P90978 | |||||||
family | PTHR23139 | ||||||||
NCBI | gene | 175270 | |||||||
RefSeq | protein | NM_001027796.4 | |||||||
NM_001381724.1 | |||||||||
SwissProt | UniProtAcc | P90978 | |||||||
TREEFAM | TREEFAM_ID | TF314111 | |||||||
UniProt_GCRP | UniProtAcc | P90978 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | uaf | ||||||||
Allele (313) | |||||||||
Strain | WBStrain00027558 | ||||||||
WBStrain00036010 | |||||||||
WBStrain00036772 | |||||||||
WBStrain00037330 | |||||||||
Component_of_genotype | WBGenotype00000106 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (27) | |||||||||
Contained_in_operon | CEOP3052 | ||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00000774 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00011059 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016245 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022351 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | uaf-1 encodes the large subunit of splicing factor U2AF (U2 Auxiliary Factor), orthologous to mammalian and Drosophila U2AF65; UAF-1 has been shown to bind RNA and this binding is enhanced by UAF-2; the abundance of one alternative transcript appears to be increased during starvation and this transcript is retained in the nucleus; uaf-1 affects embryonic viability, based on RNAi analysis. | Paper_evidence | WBPaper00002652 | |||||
WBPaper00003463 | |||||||||
WBPaper00003474 | |||||||||
WBPaper00003836 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 03 Aug 2012 00:00:00 | ||||||||
Automated_description | Enables pre-mRNA 3'-splice site binding activity. Involved in several processes, including embryonic body morphogenesis; mRNA 3'-splice site recognition; and nematode larval development. Located in nucleoplasm. Is an ortholog of human U2AF2 (U2 small nuclear RNA auxiliary factor 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS (2) | ||||||||
Corresponding_CDS_history | Y92C3B.2c:wp273 | ||||||||
Y92C3B.2d:wp273 | |||||||||
Corresponding_transcript | Y92C3B.2a.1 | ||||||||
Y92C3B.2b.1 | |||||||||
Other_sequence (83) | |||||||||
Associated_feature | WBsf666556 | ||||||||
WBsf666557 | |||||||||
WBsf991218 | |||||||||
WBsf991219 | |||||||||
WBsf1014174 | |||||||||
WBsf1014175 | |||||||||
WBsf226178 | |||||||||
WBsf226179 | |||||||||
Experimental_info | RNAi_result (29) | ||||||||
Expr_pattern | Expr1616 | ||||||||
Expr1022444 | |||||||||
Expr1032780 | |||||||||
Expr1162044 | |||||||||
Expr2017693 | |||||||||
Expr2035831 | |||||||||
Construct_product | WBCnstr00005904 | ||||||||
WBCnstr00005905 | |||||||||
Regulate_expr_cluster | WBPaper00055364:uaf-1(n4588)_downregulated | ||||||||
WBPaper00055364:uaf-1(n4588)_upregulated | |||||||||
Antibody | WBAntibody00001799 | ||||||||
Microarray_results (36) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (222) | |||||||||
Map_info | Map | III | Position | -24.7751 | Error | 0.084225 | |||
Positive | Positive_clone | Y92C3B | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5172 | |||||||
5497 | |||||||||
Pseudo_map_position | |||||||||
Reference (27) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |