WormBase Tree Display for Gene: WBGene00004745
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WBGene00004745 | SMap | S_parent | Sequence | F52E10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sdc-1 | Person_evidence | WBPerson421 | |||||
Sequence_name | F52E10.1 | ||||||||
Molecular_name | F52E10.1a | ||||||||
F52E10.1a.1 | |||||||||
CE41321 | |||||||||
F52E10.1b | |||||||||
CE03393 | |||||||||
F52E10.1b.1 | |||||||||
Other_name | egl-16 | ||||||||
CELE_F52E10.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | sdc-1 | ||||||||
DB_info | Database | AceView | gene | XQ895 | |||||
WormQTL | gene | WBGene00004745 | |||||||
WormFlux | gene | WBGene00004745 | |||||||
NDB | locus_tag | CELE_F52E10.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004745|UniProtKB=P24349 | |||||||
family | PTHR24408 | ||||||||
NCBI | gene | 181701 | |||||||
RefSeq | protein | NM_001373609.3 | |||||||
NM_078249.8 | |||||||||
SwissProt | UniProtAcc | P24349 | |||||||
TrEMBL | UniProtAcc | A0A486WU44 | |||||||
UniProt_GCRP | UniProtAcc | P24349 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sdc | ||||||||
Reference_allele | WBVar00089532 | ||||||||
Allele (105) | |||||||||
Legacy_information | n485mat : very variable bloating; some animals form bag-of-worms (Type A) or explode at vulva; abnormal vulval morphology; some masculinization of XX animals (especially at 15x). Weaker phenotype if mother n485/+. ES2/3 (adult). ME2. XX progeny of n485/Df mothers have incompletely penetrant partially male (Tra) phenotype. NA2 (y4). | ||||||||
See also e2426, n485, y4 | |||||||||
[C.elegansII] n485mat : (pka egl-16) very variable bloating; some animals form bag-of-worms (Type A) or explode at vulva; abnormal vulval morphology; some masculinization of XX animals (especially at 15C). Weaker phenotype if mother n485/+. ES2/3 (adult). ME2. XX progeny of n485/Df mothers have incompletely penetrant partially male (Tra) phenotype. OA>5; e2426, n485, y4, y67ts (30% masc. at 20C), etc. Most alleles have apparent dosage compensation defects, variable masculinizing effects. Cloned: encodes 1203 aa protein with 7 N-term zinc fingers. [Villeneuve and Meyer 1990; Nonet and Meyer 1991; TY] | |||||||||
Strain | WBStrain00026785 | ||||||||
WBStrain00027063 | |||||||||
WBStrain00047503 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (17) | |||||||||
Paralog | WBGene00015451 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00009866 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00010859 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00011710 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012969 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00019011 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00019589 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022016 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00271744 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | sdc-1 encodes a zinc-finger protein of the C2H2-type that affects egg laying and vulval development, and hermaphrodite sex determination; expressed at highest levels in embryos and in adults. | Paper_evidence | WBPaper00000635 | |||||
WBPaper00000944 | |||||||||
WBPaper00001216 | |||||||||
WBPaper00001412 | |||||||||
WBPaper00005215 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in regulation of macromolecule metabolic process and sex determination. Located in nuclear chromosome. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F52E10.1a | |||||||
F52E10.1b | |||||||||
Corresponding_CDS_history | F52E10.1:wp178 | ||||||||
Corresponding_transcript | F52E10.1a.1 | ||||||||
F52E10.1b.1 | |||||||||
Other_sequence | FC549931.1 | ||||||||
Associated_feature | WBsf663682 | ||||||||
WBsf1008485 | |||||||||
Gene_product_binds | WBsf019092 | ||||||||
WBsf019093 | |||||||||
Transcription_factor (2) | |||||||||
Experimental_info | RNAi_result | WBRNAi00015416 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089914 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090232 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047991 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090364 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090458 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090505 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090411 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090074 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089814 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1392 | ||||||||
Expr11873 | |||||||||
Expr1021521 | |||||||||
Expr1032343 | |||||||||
Expr1151806 | |||||||||
Expr2015658 | |||||||||
Expr2033891 | |||||||||
Antibody | WBAntibody00000495 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (152) | |||||||||
Interaction (163) | |||||||||
WBProcess | WBbiopr:00000056 | ||||||||
Map_info | Map | X | Position | 23.7307 | Error | 0.010104 | |||
Well_ordered | |||||||||
Positive | Positive_clone | F52E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
R09G6 | |||||||||
YK1130 | |||||||||
Mapping_data | 2_point | 726 | |||||||
3170 | |||||||||
3171 | |||||||||
Multi_point | 621 | ||||||||
1197 | |||||||||
1198 | |||||||||
1199 | |||||||||
1200 | |||||||||
1201 | |||||||||
1323 | |||||||||
1324 | |||||||||
1541 | |||||||||
1544 | |||||||||
Pos_neg_data (15) | |||||||||
Reference (111) | |||||||||
Method | Gene |