WormBase Tree Display for Gene: WBGene00000887
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WBGene00000887 | SMap | S_parent | Sequence | T01B7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cyn-11 | Person_evidence | WBPerson466 | |||||
Sequence_name | T01B7.4 | ||||||||
Molecular_name | T01B7.4 | ||||||||
T01B7.4.1 | |||||||||
CE03588 | |||||||||
Other_name (2) | |||||||||
Public_name | cyn-11 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-11 -> cyn-11 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cyn | ||||||||
Allele (22) | |||||||||
Legacy_information | [C.elegansII] NMK. Cyclophilin family (diverged CsA-binding domain). Cosmid T01B7[TP] | ||||||||
Strain | WBStrain00036551 | ||||||||
WBStrain00055387 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOP2388 | ||||||||
Ortholog (34) | |||||||||
Paralog (18) | |||||||||
Structured_description | Concise_description | cyn-11 encodes a divergent cyclophilin D isoform, with alterations in the normally well-conserved cyclophilin-binding domain, and a central 7-8 residue insert not usually found in cyclophilins, except from plants; CYN-11 has sluggish but detectable peptidyl-prolyl isomerase activity in vitro, suggesting that it has a specialized substrate in vivo; CYN-11 is dispensable for viability and gross morphology in mass RNAi screens. | Paper_evidence | WBPaper00002472 | |||||
WBPaper00005654 | |||||||||
WBPaper00026884 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle. Is an ortholog of human PPIH (peptidylprolyl isomerase H). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T01B7.4 | |||||||
Corresponding_transcript | T01B7.4.1 | ||||||||
Other_sequence (43) | |||||||||
Associated_feature | WBsf665257 | ||||||||
WBsf665846 | |||||||||
WBsf665847 | |||||||||
WBsf223540 | |||||||||
Experimental_info | RNAi_result | WBRNAi00103495 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062346 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017940 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00080136 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027812 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112131 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062347 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052082 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00080048 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076625 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020148 | ||||||||
Expr1030552 | |||||||||
Expr1155714 | |||||||||
Expr2010663 | |||||||||
Expr2028903 | |||||||||
Drives_construct | WBCnstr00037219 | ||||||||
Construct_product | WBCnstr00037219 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (29) | |||||||||
Map_info | Map | II | Position | 0.86311 | Error | 0.001543 | |||
Positive | Positive_clone | C34C6 | |||||||
T01B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00002472 | ||||||||
WBPaper00018599 | |||||||||
WBPaper00026884 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00061547 | |||||||||
WBPaper00065275 | |||||||||
Remark | Cyclophilin family (diverged CsA-binding domain). | ||||||||
[Page AM] Identified by the sequencing project. Has cyclophilin homology by Blast analysis. cDNA clone isolated. | |||||||||
PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
This gene has been renamed with approval of the CGC (cyp-11->cyn-11) | Person_evidence | WBPerson466 | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |