WormBase Tree Display for Gene: WBGene00004768
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WBGene00004768 | SMap | S_parent | Sequence | F55A11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | sel-11 | Person_evidence | WBPerson220 | |||||
Sequence_name | F55A11.3 | ||||||||
Molecular_name | F55A11.3 | ||||||||
F55A11.3.1 | |||||||||
CE05945 | |||||||||
Other_name | hrd-1 | ||||||||
CELE_F55A11.3 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | sel-11 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 05 Nov 2008 10:04:18 | WBPerson2970 | Event | Acquires_merge | WBGene00010076 | ||||
Name_change | Sequence_name | F55A11.3 | |||||||
Other_name | hrd-1 | ||||||||
Acquires_merge | WBGene00010076 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sel | ||||||||
Allele (38) | |||||||||
Legacy_information | [Sundaram M] ar39 recessive suppressor of lin-12 hypomorph, and partial suppressor of glp-1 hypomorph; no effect on lin-12 amorph; no phenotype alone; probable gf mutation. NA2 (ar84). | ||||||||
[C.elegansII] ar39 : recessive suppressor of lin-12 hypomorph, and partial suppressor of glp-1 hypomorph; no effect on lin-12 amorph; no phenotype alone; probable gf mutation. OA1: ar84. [Sundaram and Greenwald 1993; GS] | |||||||||
Strain | WBStrain00008018 | ||||||||
WBStrain00037821 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Contained_in_operon | CEOP5300 | ||||||||
Ortholog (33) | |||||||||
Paralog | WBGene00009164 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00022471 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | sel-11 encodes an E3 ubiquitin ligase; sel-11 was identified in screens for mutations that suppress the egg-laying defective (Egl) phenotype of a hypomorphic lin-12 allele; sel-11 mutations also suppress the temperature-sensitive, maternal-effect embryonic lethality of a glp-1 partial loss-of-function allele; SEL-11 functions as an ER E3 ubiquitin ligase that plays a role in the unfolded protein response (UPR), as well as growth and development of the intestine and gonad. | Paper_evidence | WBPaper00001828 | |||||
WBPaper00030999 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable metal ion binding activity and transferase activity. Involved in regulation of Notch signaling pathway and regulation of gene expression. Predicted to be located in cytoplasm. Is an ortholog of human SYVN1 (synoviolin 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F55A11.3 | |||||||
Corresponding_transcript | F55A11.3.1 | ||||||||
Other_sequence (38) | |||||||||
Associated_feature | WBsf661772 | ||||||||
WBsf977300 | |||||||||
WBsf232545 | |||||||||
Experimental_info | RNAi_result | WBRNAi00093524 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093502 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093486 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048409 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093478 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063625 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093506 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076478 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093494 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093149 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032832 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr16446 | ||||||||
Expr1020375 | |||||||||
Expr1032362 | |||||||||
Expr1152198 | |||||||||
Expr2015729 | |||||||||
Expr2033962 | |||||||||
Drives_construct | WBCnstr00037921 | ||||||||
Construct_product | WBCnstr00037921 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (90) | |||||||||
Interaction (77) | |||||||||
WBProcess | WBbiopr:00000046 | ||||||||
WBbiopr:00000076 | |||||||||
Map_info | Map | V | Position | 3.33455 | Error | 0.010731 | |||
Positive | Positive_clone | F55A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 2806 | |||||||
2807 | |||||||||
2808 | |||||||||
2809 | |||||||||
Reference (24) | |||||||||
Remark | from Sundaram & Greenwald 1993 | ||||||||
Method | Gene |