WormBase Tree Display for Gene: WBGene00004882
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WBGene00004882 | SMap | S_parent | Sequence | F46B6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | smg-4 | Person_evidence | WBPerson261 | |||||
Sequence_name | F46B6.3 | ||||||||
Molecular_name | F46B6.3a | ||||||||
F46B6.3a.1 | |||||||||
CE26973 | |||||||||
F46B6.3b | |||||||||
CE30440 | |||||||||
F46B6.3b.1 | |||||||||
Other_name | mab-14 | ||||||||
CELE_F46B6.3 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | smg-4 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | smg | ||||||||
Reference_allele | WBVar00088765 | ||||||||
Allele (31) | |||||||||
Legacy_information | See also ma116 | ||||||||
[C.elegansII] ma116 : adult male has swollen bursa, adult hermaphrodite has protruding vulva. ME1. Recessive suppressor of unc-54(r293),tra-2(e1209), etc.; suppression reduced bymaternal rescue. unc-54 nonsense RNAs accumulate. OA3: r1181, e2615psu, e2616psu. Cloned: YAC and phage rescue. [Hodgkin et al. 1989; Pulak and Anderson 1993; CB; TR] | |||||||||
Strain | WBStrain00034951 | ||||||||
WBStrain00004551 | |||||||||
WBStrain00004567 | |||||||||
WBStrain00051118 | |||||||||
WBStrain00055592 | |||||||||
WBStrain00055594 | |||||||||
WBStrain00055593 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Contained_in_operon | CEOP5236 | ||||||||
Ortholog (30) | |||||||||
Structured_description | Automated_description | Predicted to enable mRNA binding activity. Involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development. Located in nucleus and perinuclear region of cytoplasm. Expressed in intestinal cell; muscle cell; and neurons. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 14. Is an ortholog of human UPF3A (UPF3A regulator of nonsense mediated mRNA decay) and UPF3B (UPF3B regulator of nonsense mediated mRNA decay). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0060821 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20439) | ||||
Molecular_info | Corresponding_CDS | F46B6.3a | |||||||
F46B6.3b | |||||||||
Corresponding_CDS_history | F46B6.3:wp46 | ||||||||
F46B6.3:wp69 | |||||||||
F46B6.3b:wp76 | |||||||||
Corresponding_transcript | F46B6.3a.1 | ||||||||
F46B6.3b.1 | |||||||||
Other_sequence | CBC05396_1 | ||||||||
Associated_feature | WBsf234278 | ||||||||
WBsf234279 | |||||||||
Experimental_info | RNAi_result | WBRNAi00094500 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00008069 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047495 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085061 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094403 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015065 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047493 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094395 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr110 | ||||||||
Expr1337 | |||||||||
Expr1022685 | |||||||||
Expr1032421 | |||||||||
Expr1151332 | |||||||||
Expr2015910 | |||||||||
Expr2034143 | |||||||||
Drives_construct | WBCnstr00010227 | ||||||||
WBCnstr00035343 | |||||||||
Construct_product | WBCnstr00035343 | ||||||||
Antibody | WBAntibody00001272 | ||||||||
Microarray_results | SMD_F46B6.3 | ||||||||
175233_at | |||||||||
187937_s_at | |||||||||
A_12_P101705 | |||||||||
A_12_P114970 | |||||||||
A_12_P169717 | |||||||||
A_12_P169718 | |||||||||
A_12_P169719 | |||||||||
Aff_F46B6.3 | |||||||||
GPL13394_WBGene00004882 | |||||||||
GPL13914_F46B6.3 | |||||||||
GPL14144_F46B6.3b_323-382_0.859_42_C | |||||||||
GPL14144_F46B6.3b_72-131_0.872_28_B | |||||||||
GPL14144_F46B6.3b_857-916_0.941_8_A | |||||||||
GPL19516_CGZ0022036 | |||||||||
GPL19516_CGZ0022037 | |||||||||
GPL21109_F46B6.3a | |||||||||
GPL3518_CE26973 | |||||||||
GPL3518_CE30440 | |||||||||
GPL8304_CE_WBGene00004882_A | |||||||||
GPL8673_F46B6_3aP00139 | |||||||||
GPL8673_F46B6_3aP00515 | |||||||||
GPL8673_F46B6_3aP00902 | |||||||||
GPL8673_F46B6_3bP00139 | |||||||||
GPL8673_F46B6_3bP00902 | |||||||||
GPL8673_F46B6_3bP01048 | |||||||||
GPL9450_F46B6.3b | |||||||||
cea2.d.26427 | |||||||||
Expression_cluster (112) | |||||||||
Interaction (50) | |||||||||
Map_info | Map | V | Position | 2.19411 | Error | 0.006525 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | eDf1 | |||||||
Positive_clone | F46B6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point | 3387 | |||||||
Multi_point | 1192 | ||||||||
3101 | |||||||||
3102 | |||||||||
5376 | |||||||||
Pos_neg_data | 4574 | ||||||||
4575 | |||||||||
Reference (38) | |||||||||
Method | Gene |