WormBase Tree Display for Gene: WBGene00000955
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| WBGene00000955 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | des-2 | Person_evidence | WBPerson95 | |||||
| Sequence_name | T26H10.1 | ||||||||
| Molecular_name | T26H10.1a | ||||||||
| T26H10.1a.1 | |||||||||
| CE21208 | |||||||||
| T26H10.1b | |||||||||
| CE47329 | |||||||||
| T26H10.1a.2 | |||||||||
| T26H10.1b.1 | |||||||||
| Other_name | acr-4 | ||||||||
| CELE_T26H10.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | des-2 | ||||||||
| DB_info | Database | AceView | gene | 5L894 | |||||
| WormQTL | gene | WBGene00000955 | |||||||
| WormFlux | gene | WBGene00000955 | |||||||
| NDB | locus_tag | CELE_T26H10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000955|UniProtKB=O76554 | |||||||
| family | PTHR18945 | ||||||||
| NCBI | gene | 179574 | |||||||
| RefSeq | protein | NM_001392616.1 | |||||||
| NM_001392615.1 | |||||||||
| SwissProt | UniProtAcc | O76554 | |||||||
| TrEMBL | UniProtAcc | H9G2Y4 | |||||||
| UniProt_GCRP | UniProtAcc | O76554 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | des | ||||||||
| Allele (93) | |||||||||
| Legacy_information | [C.elegansII] Mutation acts as a suppressor of deg-3(u662). [Treinin & Chalfie 1995; TU] | ||||||||
| Strain | WBStrain00035046 | ||||||||
| WBStrain00035004 | |||||||||
| WBStrain00052612 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Contained_in_operon | CEOP5284 | ||||||||
| Ortholog (26) | |||||||||
| Paralog (100) | |||||||||
| Structured_description | Concise_description | des-2 encodes an alpha subunit of nicotinic acetylcholine receptor (nAChR), predicted to be a ligand-gated ion channel regulating the fast action of acetylcholine at neuromuscular junctions and in the nervous system; DES-2 is coexpressed with and genetically interacts with DEG-3, which which it probably forms heteromultimers, and DES-2 falls into the 'DEG-3' class of nAChR subunits, probably unique to nematodes, which includes DEG-3, ACR-5, ACR-17, ACR-18 ACR-20, and ACR-23. | Paper_evidence | WBPaper00003338 | |||||
| WBPaper00005223 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Located in plasma membrane. Expressed in AIY; ALA; IL2 neuron; and pm1. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T26H10.1a | |||||||
| T26H10.1b | |||||||||
| Corresponding_transcript | T26H10.1a.1 | ||||||||
| T26H10.1a.2 | |||||||||
| T26H10.1b.1 | |||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf669382 | ||||||||
| WBsf669383 | |||||||||
| WBsf718402 | |||||||||
| WBsf1001346 | |||||||||
| WBsf1020446 | |||||||||
| WBsf1020447 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00054226 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00102750 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016518 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027847 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066378 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019274 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115934 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr627 | ||||||||
| Expr9116 | |||||||||
| Expr10074 | |||||||||
| Expr1014659 | |||||||||
| Expr1030593 | |||||||||
| Expr1157773 | |||||||||
| Expr1200287 | |||||||||
| Expr2010860 | |||||||||
| Expr2029098 | |||||||||
| Drives_construct (21) | |||||||||
| Construct_product | WBCnstr00006092 | ||||||||
| WBCnstr00006971 | |||||||||
| WBCnstr00037181 | |||||||||
| Microarray_results | SMD_K03B8.10 | ||||||||
| SMD_T26H10.1 | |||||||||
| 175827_at | |||||||||
| 193423_s_at | |||||||||
| A_12_P102546 | |||||||||
| Aff_K03B8.10 | |||||||||
| GPL13394_WBGene00000955 | |||||||||
| GPL13914_T26H10.1 | |||||||||
| GPL14144_T26H10.1_1254-1313_0.941_6_C | |||||||||
| GPL14144_T26H10.1_1545-1604_0.964_1_A | |||||||||
| GPL14144_T26H10.1_1606-1665_0.948_4_B | |||||||||
| GPL19516_CGZ0036963 | |||||||||
| GPL19516_CGZ0036964 | |||||||||
| GPL21109_T26H10.1a | |||||||||
| GPL21109_T26H10.1b | |||||||||
| GPL3518_CE21208 | |||||||||
| GPL8304_CE_WBGene00000955_A | |||||||||
| GPL8673_T26H10_1P00649 | |||||||||
| GPL8673_T26H10_1P01101 | |||||||||
| GPL8673_T26H10_1P01484 | |||||||||
| GPL9450_T26H10.1 | |||||||||
| cea2.d.06009 | |||||||||
| Expression_cluster (150) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | V | Position | 3.09462 | Error | 0.004712 | |||
| Positive | Positive_clone | K03B8 | |||||||
| T26H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 4255 | |||||||
| 4490 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (41) | |||||||||
| Remark | Sequence K03B8.10 removed.No longer exists. gene at overlap with cosmid T26H10. [sdm 000917] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
