WormBase Tree Display for Gene: WBGene00000881
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| WBGene00000881 | SMap | S_parent | Sequence | F31C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-5 | Person_evidence | WBPerson466 | |||||
| Sequence_name | F31C3.1 | ||||||||
| Molecular_name | F31C3.1 | ||||||||
| F31C3.1.1 | |||||||||
| CE17730 | |||||||||
| Other_name | cyp-5 | Person_evidence | WBPerson466 | ||||||
| CELE_F31C3.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | cyn-5 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-5 -> cyn-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (34) | |||||||||
| Legacy_information | [C.elegansII] NMK. Cyclophilin family, transspliced to SL1. Cosmid B0467. [TP] | ||||||||
| Strain | WBStrain00001607 | ||||||||
| WBStrain00002246 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP1776 | ||||||||
| Ortholog (40) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-5 encodes a cyclophilin that is functional in vitro and is predicted to be a secreted protein that is structurally most similar to human cyclophilin B; expressed in the intestine. | Paper_evidence | WBPaper00005482 | |||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Enables peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Located in cytoplasm. Expressed in intestine. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 9. Is an ortholog of human PPIB (peptidylprolyl isomerase B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110349 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9255) | ||||
| Molecular_info | Corresponding_CDS | F31C3.1 | |||||||
| Corresponding_transcript | F31C3.1.1 | ||||||||
| Other_sequence (187) | |||||||||
| Associated_feature | WBsf034267 | ||||||||
| WBsf649789 | |||||||||
| WBsf649790 | |||||||||
| WBsf665195 | |||||||||
| WBsf981150 | |||||||||
| WBsf220682 | |||||||||
| WBsf220683 | |||||||||
| WBsf220684 | |||||||||
| WBsf220685 | |||||||||
| WBsf220686 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045993 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024339 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022706 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024338 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022705 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00002446 | ||||||||
| WBCnstr00004345 | |||||||||
| WBCnstr00010562 | |||||||||
| WBCnstr00037225 | |||||||||
| Construct_product | WBCnstr00010562 | ||||||||
| WBCnstr00037225 | |||||||||
| Antibody | WBAntibody00000560 | ||||||||
| Microarray_results | SMD_F31C3.1 | ||||||||
| 190460_s_at | |||||||||
| A_12_P115485 | |||||||||
| A_12_P136085 | |||||||||
| Aff_F31C3.1 | |||||||||
| GPL13394_WBGene00000881 | |||||||||
| GPL13914_F31C3.1 | |||||||||
| GPL14144_F31C3.1_148-207_0.905_3_B | |||||||||
| GPL14144_F31C3.1_227-286_0.700_37_C | |||||||||
| GPL14144_F31C3.1_81-140_0.912_1_A | |||||||||
| GPL19516_CGZ0019051 | |||||||||
| GPL21109_F31C3.1 | |||||||||
| GPL3518_CE17730 | |||||||||
| GPL8304_CE_WBGene00000881_A | |||||||||
| GPL8673_F31C3_1P00036 | |||||||||
| GPL8673_F31C3_1P00406 | |||||||||
| GPL8673_F31C3_1P00495 | |||||||||
| GPL9450_F31C3.1 | |||||||||
| cea2.c.03243 | |||||||||
| Expression_cluster (146) | |||||||||
| Interaction (101) | |||||||||
| Map_info | Map | I | Position | 29.7598 | |||||
| Positive | Positive_clone | B0467 | Author_evidence | Page AM | |||||
| F31C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Y62C9 | Author_evidence | Page AM | |||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | [Page AM] Is transpliced by SL-1. Isolated from mixed stage cDNA by using SL1, and known 3' seq from CEESH33F. Hybridises to YACs Y62C9, and by PCR and Southerns to cosmid B0467. | ||||||||
| cDNAs CEMSA21F,CEMSA21R,CEMSH33F,CEMSH33R represent this gene. They have been taken out of the moleculat information above. [sdm 11/2000] | |||||||||
| PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
| This gene has been renamed with approval of the CGC (cyp-5->cyn-5) | Person_evidence | WBPerson466 | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
