WormBase Tree Display for Gene: WBGene00016354
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WBGene00016354 | SMap | S_parent | Sequence | C33F10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | rig-6 | Person_evidence | WBPerson1103 | |||||
Sequence_name | C33F10.5 | ||||||||
Molecular_name | C33F10.5c | ||||||||
C33F10.5a | |||||||||
CE31679 | |||||||||
C33F10.5d | |||||||||
CE37327 | |||||||||
C33F10.5c.1 | |||||||||
C33F10.5d.1 | |||||||||
Other_name | tag-227 | Person_evidence | WBPerson201 | ||||||
CELE_C33F10.5 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | rig-6 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 25 Jan 2005 16:28:46 | WBPerson2970 | Name_change | CGC_name | rig-6 | ||||
3 | 06 Oct 2005 11:33:04 | WBPerson2970 | Event | Acquires_merge | WBGene00044064 | ||||
Name_change | Other_name | tag-227 | |||||||
Acquires_merge | WBGene00044064 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rig | ||||||||
Allele (166) | |||||||||
Possibly_affected_by | WBVar02157851 | ||||||||
Strain | WBStrain00036006 | ||||||||
WBStrain00036110 | |||||||||
WBStrain00036147 | |||||||||
WBStrain00036345 | |||||||||
WBStrain00055147 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022057 | ||||||||
00022058 | |||||||||
00022059 | |||||||||
00022060 | |||||||||
00022061 | |||||||||
00022062 | |||||||||
00022063 | |||||||||
00022064 | |||||||||
00022065 | |||||||||
00022066 | |||||||||
00022067 | |||||||||
00022068 | |||||||||
00022069 | |||||||||
00022070 | |||||||||
00022071 | |||||||||
00022072 | |||||||||
00022073 | |||||||||
00022074 | |||||||||
00022075 | |||||||||
00022076 | |||||||||
00022077 | |||||||||
00022078 | |||||||||
00022079 | |||||||||
00022080 | |||||||||
00022081 | |||||||||
00022082 | |||||||||
00022083 | |||||||||
00022084 | |||||||||
00022085 | |||||||||
00022086 | |||||||||
00022087 | |||||||||
00022088 | |||||||||
00022089 | |||||||||
00022090 | |||||||||
00022091 | |||||||||
00022092 | |||||||||
Ortholog (51) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | rig-6 encodes a protein with immunoglobulin and fibronectin type III domains and is similar to vertebrate contactins; based upon large-scale RNAi screens, rig-6 activity appears to be required for reproduction and positive regulation of body size; rig-6::gfp reporter fusion are expressed in neurons, particularly the URX ring interneurons. | Paper_evidence | WBPaper00004651 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 19 Jul 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable cell-cell adhesion mediator activity. Involved in several processes, including axon guidance; negative regulation of defecation rhythm; and regulation of locomotion. Located in axon; neuronal cell body; and synapse. Expressed in several structures, including body wall musculature; neurons; non-striated muscle; rectal epithelium; and spermatheca. Human ortholog(s) of this gene implicated in several diseases, including Compton-North congenital myopathy; familial adult myoclonic epilepsy 5; and high grade glioma. Is an ortholog of human CNTN6 (contactin 6). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0111691 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||
DOID:850 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||||
DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||||
DOID:0080101 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2171) | ||||||
Molecular_info | Corresponding_CDS | C33F10.5c | |||||||
C33F10.5d | |||||||||
Corresponding_CDS_history | C33F10.5a:wp261 | ||||||||
C33F10.5b:wp261 | |||||||||
Corresponding_transcript | C33F10.5a | ||||||||
C33F10.5c.1 | |||||||||
C33F10.5d.1 | |||||||||
Other_sequence (26) | |||||||||
Associated_feature (29) | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Expr1767 | ||||||||
Expr8850 | |||||||||
Expr10584 | |||||||||
Expr16093 | |||||||||
Expr1025818 | |||||||||
Expr1037002 | |||||||||
Expr1145797 | |||||||||
Expr2015355 | |||||||||
Expr2033589 | |||||||||
Drives_construct (4) | |||||||||
Construct_product | WBCnstr00017011 | ||||||||
WBCnstr00028138 | |||||||||
Microarray_results (38) | |||||||||
Expression_cluster (196) | |||||||||
Interaction (12) | |||||||||
Map_info | Map | II | Position | -3.02721 | Error | 0.005159 | |||
Positive | Positive_clone | C33F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5556 | |||||||
5328 | |||||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |