WormBase Tree Display for Gene: WBGene00004490
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WBGene00004490 | SMap | S_parent | Sequence | F37C12 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rps | ||||||
Allele | WBVar01500260 | ||||||
WBVar01645365 | |||||||
WBVar01499774 | |||||||
WBVar01825495 | |||||||
WBVar01499237 | |||||||
WBVar02053330 | |||||||
WBVar00837914 | |||||||
WBVar00837915 | |||||||
WBVar00837916 | |||||||
WBVar00401240 | |||||||
Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps21 using blastP | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00047126 | ||||||
00047127 | |||||||
00047128 | |||||||
00047129 | |||||||
00047130 | |||||||
00047131 | |||||||
00047132 | |||||||
00047133 | |||||||
00047134 | |||||||
00047135 | |||||||
00047136 | |||||||
00047137 | |||||||
00113015 | |||||||
00113016 | |||||||
00113017 | |||||||
Ortholog (35) | |||||||
Structured_description | Concise_description | rps-21 encodes a small ribosomal subunit S21 protein; by homology, RPS-21 is predicted to function in protein biosynthesis; in C. elegans, RPS-21 activity is required for embryonic and germline development, as well as the overall health of the animal. | Paper_evidence | WBPaper00004403 | |||
WBPaper00005654 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytosol; ribosome; and rough endoplasmic reticulum. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS21 (ribosomal protein S21). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F37C12.11 | |||||
Corresponding_transcript | F37C12.11.1 | ||||||
Other_sequence (285) | |||||||
Associated_feature | WBsf651180 | ||||||
WBsf667046 | |||||||
WBsf992955 | |||||||
WBsf1015202 | |||||||
WBsf226926 | |||||||
WBsf226927 | |||||||
Experimental_info | RNAi_result (29) | ||||||
Expr_pattern | Chronogram728 | ||||||
Chronogram1946 | |||||||
Expr5980 | |||||||
Expr1011153 | |||||||
Expr1032293 | |||||||
Expr1150488 | |||||||
Expr2015516 | |||||||
Expr2033751 | |||||||
Drives_construct | WBCnstr00003591 | ||||||
WBCnstr00035445 | |||||||
Construct_product | WBCnstr00035445 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (167) | |||||||
Interaction (260) | |||||||
Map_info | Map | III | Position | -0.775211 | Error | 0.000213 | |
Positive | Positive_clone | F37C12 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00028564 | ||||||
WBPaper00033090 | |||||||
WBPaper00035215 | |||||||
WBPaper00035286 | |||||||
WBPaper00038491 | |||||||
WBPaper00049828 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |