WormBase Tree Display for Gene: WBGene00000798
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| WBGene00000798 | Evidence | Paper_evidence | WBPaper00005857 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C14A4 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | crn-5 | Person_evidence | WBPerson1606 | |||||
| Sequence_name | C14A4.5 | ||||||||
| Molecular_name | C14A4.5 | ||||||||
| C14A4.5.1 | |||||||||
| CE02146 | |||||||||
| Other_name | exos-5 | Person_evidence | WBPerson699 | ||||||
| WBPerson6229 | |||||||||
| CELE_C14A4.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | crn-5 | ||||||||
| DB_info | Database | AceView | gene | 2K883 | |||||
| WormQTL | gene | WBGene00000798 | |||||||
| WormFlux | gene | WBGene00000798 | |||||||
| NDB | locus_tag | CELE_C14A4.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000798|UniProtKB=G5EG59 | |||||||
| family | PTHR11953 | ||||||||
| NCBI | gene | 174634 | |||||||
| RefSeq | protein | NM_063883.4 | |||||||
| SwissProt | UniProtAcc | G5EG59 | |||||||
| TREEFAM | TREEFAM_ID | TF315920 | |||||||
| UniProt_GCRP | UniProtAcc | G5EG59 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | Other_name | exos-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | crn | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018523 | ||||||||
| 00018524 | |||||||||
| 00018525 | |||||||||
| 00018526 | |||||||||
| 00018527 | |||||||||
| 00018528 | |||||||||
| 00018529 | |||||||||
| 00018530 | |||||||||
| 00018531 | |||||||||
| 00018532 | |||||||||
| 00018533 | |||||||||
| 00018534 | |||||||||
| 00018535 | |||||||||
| 00018536 | |||||||||
| 00018537 | |||||||||
| 00018538 | |||||||||
| 00018539 | |||||||||
| 00018540 | |||||||||
| 00018541 | |||||||||
| 00018542 | |||||||||
| 00018543 | |||||||||
| 00018544 | |||||||||
| 00018545 | |||||||||
| 00018546 | |||||||||
| Contained_in_operon | CEOP2496 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00000202 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007201 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | crn-5 encodes a cell death-related nuclease which is a homolog of Rrp46, an eukaryotic ribonulease component of the exosome, involved in RNA processing; crn-5 is believed to function in a large multinuclease complex, the degradeosome, whose components include the protein products of cps-6, crn-1, crn-4, cpy-13 and other non-nuclease components like wah-1, to promote apoptotic DNA degradation; crn-5 has been shown to bind DNA without detectable DNase activity but enhances the DNase activity of CRN-4, a DEDD family apoptotic DNAase and RNase. | Paper_evidence | WBPaper00005857 | |||||
| WBPaper00036712 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 22 Oct 2010 00:00:00 | ||||||||
| Automated_description | Enables double-stranded DNA binding activity and enzyme binding activity. Involved in RNA processing and apoptotic DNA fragmentation. Part of exosome (RNase complex). Is an ortholog of human EXOSC5 (exosome component 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C14A4.5 | |||||||
| Corresponding_transcript | C14A4.5.1 | ||||||||
| Other_sequence | Hbac_isotig03698 | ||||||||
| CJC05327_1 | |||||||||
| CGC00890_1 | |||||||||
| CBC01241_1 | |||||||||
| EX010442.1 | |||||||||
| Associated_feature | WBsf989405 | ||||||||
| WBsf222035 | |||||||||
| Experimental_info | RNAi_result (9) | ||||||||
| Expr_pattern | Expr1018453 | ||||||||
| Expr1030497 | |||||||||
| Expr1144540 | |||||||||
| Expr2010540 | |||||||||
| Expr2028780 | |||||||||
| Drives_construct | WBCnstr00037268 | ||||||||
| Construct_product | WBCnstr00037268 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction (40) | |||||||||
| WBProcess | WBbiopr:00000014 | ||||||||
| WBbiopr:00000103 | |||||||||
| Map_info | Map | II | Position | 3.12021 | Error | 0.000298 | |||
| Positive | Positive_clone | C14A4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (9) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
