WormBase Tree Display for Gene: WBGene00000798
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WBGene00000798 | Evidence | Paper_evidence | WBPaper00005857 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C14A4 | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | crn-5 | Person_evidence | WBPerson1606 | |||||
Sequence_name | C14A4.5 | ||||||||
Molecular_name (3) | |||||||||
Other_name | exos-5 | Person_evidence | WBPerson699 | ||||||
WBPerson6229 | |||||||||
CELE_C14A4.5 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | crn-5 | ||||||||
DB_info | Database | AceView | gene | 2K883 | |||||
WormQTL | gene | WBGene00000798 | |||||||
WormFlux | gene | WBGene00000798 | |||||||
NDB | locus_tag | CELE_C14A4.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000798|UniProtKB=G5EG59 | |||||||
family | PTHR11953 | ||||||||
NCBI | gene | 174634 | |||||||
RefSeq | protein | NM_063883.4 | |||||||
SwissProt | UniProtAcc | G5EG59 | |||||||
TREEFAM | TREEFAM_ID | TF315920 | |||||||
UniProt_GCRP | UniProtAcc | G5EG59 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | Other_name | exos-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | crn | ||||||||
Allele (16) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00018523 | ||||||||
00018524 | |||||||||
00018525 | |||||||||
00018526 | |||||||||
00018527 | |||||||||
00018528 | |||||||||
00018529 | |||||||||
00018530 | |||||||||
00018531 | |||||||||
00018532 | |||||||||
00018533 | |||||||||
00018534 | |||||||||
00018535 | |||||||||
00018536 | |||||||||
00018537 | |||||||||
00018538 | |||||||||
00018539 | |||||||||
00018540 | |||||||||
00018541 | |||||||||
00018542 | |||||||||
00018543 | |||||||||
00018544 | |||||||||
00018545 | |||||||||
00018546 | |||||||||
Contained_in_operon | CEOP2496 | ||||||||
Ortholog (34) | |||||||||
Paralog | WBGene00000202 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00007201 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | crn-5 encodes a cell death-related nuclease which is a homolog of Rrp46, an eukaryotic ribonulease component of the exosome, involved in RNA processing; crn-5 is believed to function in a large multinuclease complex, the degradeosome, whose components include the protein products of cps-6, crn-1, crn-4, cpy-13 and other non-nuclease components like wah-1, to promote apoptotic DNA degradation; crn-5 has been shown to bind DNA without detectable DNase activity but enhances the DNase activity of CRN-4, a DEDD family apoptotic DNAase and RNase. | Paper_evidence | WBPaper00005857 | |||||
WBPaper00036712 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 22 Oct 2010 00:00:00 | ||||||||
Automated_description | Enables double-stranded DNA binding activity and enzyme binding activity. Involved in RNA processing and apoptotic DNA fragmentation. Part of exosome (RNase complex). Is an ortholog of human EXOSC5 (exosome component 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C14A4.5 | |||||||
Corresponding_transcript | C14A4.5.1 | ||||||||
Other_sequence | Hbac_isotig03698 | ||||||||
CJC05327_1 | |||||||||
CGC00890_1 | |||||||||
CBC01241_1 | |||||||||
EX010442.1 | |||||||||
Associated_feature | WBsf989405 | ||||||||
WBsf222035 | |||||||||
Experimental_info | RNAi_result (9) | ||||||||
Expr_pattern | Expr1018453 | ||||||||
Expr1030497 | |||||||||
Expr1144540 | |||||||||
Expr2010540 | |||||||||
Expr2028780 | |||||||||
Drives_construct | WBCnstr00037268 | ||||||||
Construct_product | WBCnstr00037268 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (86) | |||||||||
Interaction (40) | |||||||||
WBProcess | WBbiopr:00000014 | ||||||||
WBbiopr:00000103 | |||||||||
Map_info | Map | II | Position | 3.12021 | Error | 0.000298 | |||
Positive | Positive_clone | C14A4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005857 | ||||||||
WBPaper00006283 | |||||||||
WBPaper00019408 | |||||||||
WBPaper00027291 | |||||||||
WBPaper00029254 | |||||||||
WBPaper00029257 | |||||||||
WBPaper00036712 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |