WormBase Tree Display for Gene: WBGene00003926
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| WBGene00003926 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F25H2 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | pas-5 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F25H2.9 | ||||||||
| Molecular_name | F25H2.9 | ||||||||
| F25H2.9.1 | |||||||||
| CE09654 | |||||||||
| Other_name | syt-2 | Paper_evidence | WBPaper00032104 | ||||||
| CELE_F25H2.9 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pas-5 | ||||||||
| DB_info | Database | AceView | gene | 1L143 | |||||
| WormQTL | gene | WBGene00003926 | |||||||
| WormFlux | gene | WBGene00003926 | |||||||
| NDB | locus_tag | CELE_F25H2.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003926|UniProtKB=Q95008 | |||||||
| family | PTHR11599 | ||||||||
| NCBI | gene | 172942 | |||||||
| RefSeq | protein | NM_060364.7 | |||||||
| SwissProt | UniProtAcc | Q95008 | |||||||
| TREEFAM | TREEFAM_ID | TF106211 | |||||||
| UniProt_GCRP | UniProtAcc | Q95008 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 09 Jan 2009 11:41:23 | WBPerson2970 | Name_change | Other_name | syt-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pas | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00036234 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00087853 | ||||||||
| 00087854 | |||||||||
| 00087855 | |||||||||
| 00087856 | |||||||||
| 00087857 | |||||||||
| 00087858 | |||||||||
| 00087859 | |||||||||
| 00087860 | |||||||||
| 00087861 | |||||||||
| 00087862 | |||||||||
| 00087863 | |||||||||
| 00112010 | |||||||||
| 00112011 | |||||||||
| 00112012 | |||||||||
| 00112013 | |||||||||
| Ortholog (37) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | pas-5 encodes a proteasome alpha-type five subunit of the core 20S proteasome subcomplex; loss of pas-5 activity via RNAi results in a variety of defects including embryonic and larval lethality, sterility, and abnormal locomotion; loss of pas-5 activity also results in activation of SKN-1, a transcription factor required in adult worms for the acute response to oxidative stress and maternally for embryonic development. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00030965 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Expressed in body wall musculature; germ line; gonad; hypodermis; and vulva. Is an ortholog of human PSMA5 (proteasome 20S subunit alpha 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25H2.9 | |||||||
| Corresponding_transcript | F25H2.9.1 | ||||||||
| Other_sequence (108) | |||||||||
| Associated_feature | WBsf643695 | ||||||||
| WBsf643696 | |||||||||
| WBsf654826 | |||||||||
| WBsf656880 | |||||||||
| WBsf985038 | |||||||||
| WBsf1010569 | |||||||||
| WBsf218452 | |||||||||
| Experimental_info | RNAi_result (36) | ||||||||
| Expr_pattern | Expr9677 | ||||||||
| Expr1027785 | |||||||||
| Expr1031859 | |||||||||
| Expr1149459 | |||||||||
| Expr2014744 | |||||||||
| Expr2032978 | |||||||||
| Drives_construct | WBCnstr00008738 | ||||||||
| WBCnstr00014220 | |||||||||
| WBCnstr00035792 | |||||||||
| Construct_product | WBCnstr00035792 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction (154) | |||||||||
| Map_info | Map | I | Position | 5.05517 | Error | 0.00012 | |||
| Positive | Positive_clone | F25H2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024430 | ||||||||
| WBPaper00026640 | |||||||||
| WBPaper00027342 | |||||||||
| WBPaper00028360 | |||||||||
| WBPaper00029221 | |||||||||
| WBPaper00030965 | |||||||||
| WBPaper00032182 | |||||||||
| WBPaper00034856 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00036083 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041601 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
