WormBase Tree Display for Gene: WBGene00004807

WBGene00004807 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: skr-1 Person_evidence: WBPerson322
      Sequence_name: F46A9.5
      Molecular_name: F46A9.5
        F46A9.5.1
        CE10580
      Other_name: CELE_F46A9.5 Accession_evidence: NDB BX284601
      Public_name: skr-1
    DB_info: Database: AceView gene 1K49
        WormQTL gene WBGene00004807
        WormFlux gene WBGene00004807
        NDB locus_tag CELE_F46A9.5
        Panther gene CAEEL|WormBase=WBGene00004807|UniProtKB=G5ECU1
          family PTHR11165
        NCBI gene 172775
        RefSeq protein NM_060112.8
        SwissProt UniProtAcc G5ECU1
        TREEFAM TREEFAM_ID TF354233
        UniProt_GCRP UniProtAcc G5ECU1
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: skr
    Allele (14)
    Strain: WBStrain00036440
      WBStrain00005195
    RNASeq_FPKM (74)
    GO_annotation: 00012484
      00012485
      00012486
      00012487
      00012488
      00012489
      00012490
      00012491
      00012492
      00012493
      00012494
      00012495
      00012496
      00012497
      00012498
      00012499
      00012500
      00012501
      00012502
      00012503
      00012504
      00012505
      00012506
      00012507
      00012508
      00012509
      00012510
      00012511
      00012512
      00012513
      00012514
      00113214
    Ortholog: WBGene00068552 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00026551 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142698 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128909 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00209593 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00144421 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00113534 Pristionchus pacificus From_analysis: OMA
      CBOVI.g10195 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g573 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11021 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g20976 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4806 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6344 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14206 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g524 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9316 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g653 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00466.g11173 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_I.g1477 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_IV.g12574 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_IV.g12576 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14860 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00089.g3945 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00659.g14099 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_08427.g38699 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11582 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000509 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g21634 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10065200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1809 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246295 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258939 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285691 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002736 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0025637 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0026174 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0026175 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0031074 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0026176 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0034863 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1707 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:10899 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:103575 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1359648 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (19)
    Structured_description: Concise_description: The skr-1 gene encodes a homolog of Skp1 in S. cerevisiae that is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis. Paper_evidence: WBPaper00005128
            WBPaper00005129
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable cullin family protein binding activity. Involved in several processes, including negative regulation of intracellular signal transduction; regulation of cellular component organization; and regulation of protein stability. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including pharynx and spermatheca. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F46A9.5
    Corresponding_transcript: F46A9.5.1
    Other_sequence (144)
    Associated_feature: WBsf643588
      WBsf643589
      WBsf656751
      WBsf656752
      WBsf984704
      WBsf218286
      WBsf218287
      WBsf218288
      WBsf218289
  Experimental_info: RNAi_result (53)
    Expr_pattern: Expr2437
      Expr13172
      Expr1013389
      Expr1032386
      Expr1151310
      Expr2015847
      Expr2034080
    Drives_construct: WBCnstr00010827
      WBCnstr00035375
    Construct_product: WBCnstr00010827
      WBCnstr00035375
      WBCnstr00039337
    Regulate_expr_cluster: WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated
    Antibody: WBAntibody00002336
      WBAntibody00002337
    Microarray_results (24)
    Expression_cluster (98)
    Interaction (235)
    WBProcess: WBbiopr:00000068
  Map_info: Map: I Position: 3.76789 Error: 0.000506
    Positive: Positive_clone: F46A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (31)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene