WormBase Tree Display for Gene: WBGene00004450

WBGene00004450 SMap: S_parent: Sequence: F37C12
  Identity: Version: 1
    Name: CGC_name: rpl-36
      Sequence_name: F37C12.4
      Molecular_name: F37C12.4
        F37C12.4.1
        CE30781
      Other_name: CELE_F37C12.4 Accession_evidence: NDB BX284603
      Public_name: rpl-36
    DB_info: Database: AceView gene 3I271
        WormQTL gene WBGene00004450
        WormFlux gene WBGene00004450
        NDB locus_tag CELE_F37C12.4
        Panther gene CAEEL|WormBase=WBGene00004450|UniProtKB=P49181
          family PTHR10114
        NCBI gene 176007
        RefSeq protein NM_066172.10
        SwissProt UniProtAcc P49181
        TREEFAM TREEFAM_ID TF314463
        UniProt_GCRP UniProtAcc P49181
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (16)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl36 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00047089
      00047090
      00047091
      00047092
      00047093
      00047094
      00047095
      00047096
      00047097
      00047098
      00112910
      00112911
      00112912
    Contained_in_operon: CEOP3416
    Ortholog: WBGene00054714 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030158 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00141992 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124880 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00103894 Pristionchus pacificus From_analysis: OMA
      WBGene00235061 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5651 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g246 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4659 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16432 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23898 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1295 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9760 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4718 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g686 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16163 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01078.g15613 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_14521.g24682 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpl-36 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold489.g2044 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00350.g9921 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_22008 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009833 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11616 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13460 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g16949 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30239800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8096 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244735 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261948 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00295100 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004807 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000006438 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0002579 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040622-2 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:13631 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1860603 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3644086 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      RGD:62085 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1564268 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1564730 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:2325111 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2322117 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2320900 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2320881 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:9314470 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:41280378 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:40967231 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
    Structured_description: Concise_description: rpl-36 encodes a large ribosomal subunit L36 protein; by homology, RPL-36 is predicted to function in protein biosynthesis; in C. elegans, RPL-36 activity is required for embryonic and germline development and normal postembryonic growth rates. Paper_evidence: WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytosol and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL36 (ribosomal protein L36). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F37C12.4
    Corresponding_transcript: F37C12.4.1
    Other_sequence (282)
    Associated_feature: WBsf654975
      WBsf225206
      WBsf225207
  Experimental_info: RNAi_result (19)
    Expr_pattern: Expr1026550
      Expr1032254
      Expr1150499
      Expr2015469
      Expr2033704
    Drives_construct: WBCnstr00035476
    Construct_product: WBCnstr00035476
    Microarray_results (19)
    Expression_cluster (169)
    Interaction (206)
  Map_info: Map: III Position: -0.776104 Error: 0.000137
    Positive: Positive_clone: F37C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006028
    WBPaper00035228
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00065861
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene