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WormBase Tree Display for Gene: WBGene00004807

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Name Class

WBGene00004807EvidenceCGC_data_submission
SMapS_parentSequenceCHROMOSOME_I
IdentityVersion1
NameCGC_nameskr-1Person_evidenceWBPerson322
Sequence_nameF46A9.5
Molecular_nameF46A9.5
F46A9.5.1
CE10580
Other_nameCELE_F46A9.5Accession_evidenceNDBBX284601
Public_nameskr-1
DB_infoDatabaseAceViewgene1K49
WormQTLgeneWBGene00004807
WormFluxgeneWBGene00004807
NDBlocus_tagCELE_F46A9.5
PanthergeneCAEEL|WormBase=WBGene00004807|UniProtKB=G5ECU1
familyPTHR11165
NCBIgene172775
RefSeqproteinNM_060112.8
SwissProtUniProtAccG5ECU1
TREEFAMTREEFAM_IDTF354233
UniProt_GCRPUniProtAccG5ECU1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (14)
StrainWBStrain00036440
WBStrain00005195
RNASeq_FPKM (74)
GO_annotation00012484
00012485
00012486
00012487
00012488
00012489
00012490
00012491
00012492
00012493
00012494
00012495
00012496
00012497
00012498
00012499
00012500
00012501
00012502
00012503
00012504
00012505
00012506
00012507
00012508
00012509
00012510
00012511
00012512
00012513
00012514
00113214
Ortholog (44)
Paralog (19)
Structured_descriptionConcise_descriptionThe skr-1 gene encodes a homolog of Skp1 in S. cerevisiae that is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis.Paper_evidenceWBPaper00005128
WBPaper00005129
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Involved in several processes, including negative regulation of intracellular signal transduction; regulation of cellular component organization; and regulation of protein stability. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including pharynx and spermatheca. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF46A9.5
Corresponding_transcriptF46A9.5.1
Other_sequence (144)
Associated_featureWBsf643588
WBsf643589
WBsf656751
WBsf656752
WBsf984704
WBsf218286
WBsf218287
WBsf218288
WBsf218289
Experimental_infoRNAi_result (53)
Expr_patternExpr2437
Expr13172
Expr1013389
Expr1032386
Expr1151310
Expr2015847
Expr2034080
Drives_constructWBCnstr00010827
WBCnstr00035375
Construct_productWBCnstr00010827
WBCnstr00035375
WBCnstr00039337
Regulate_expr_clusterWBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated
AntibodyWBAntibody00002336
WBAntibody00002337
Microarray_resultsSMD_F30A10.1
SMD_F46A9.5
193777_s_at
A_12_P101919
A_12_P149845
A_12_P149847
Aff_F46A9.5
GPL13394_WBGene00004807
GPL13914_F46A9.5
GPL14144_F46A9.5_282-341_0.960_3_B
GPL14144_F46A9.5_404-463_0.936_8_C
GPL14144_F46A9.5_469-528_0.966_1_A
GPL19516_CGZ0021990
GPL19516_CGZ0021991
GPL19516_CGZ0021992
GPL21109_F46A9.5.1
GPL3518_CE10580
GPL8304_CE_WBGene00004807_A
GPL8304_CE_WBGene00004807_B
GPL8673_F46A9_5P00209
GPL8673_F46A9_5P00225
GPL8673_F46A9_5P00366
GPL9450_F46A9.5
cea2.c.03639
Expression_cluster (98)
Interaction (235)
WBProcessWBbiopr:00000068
Map_infoMapIPosition3.76789Error0.000506
PositivePositive_cloneF46A9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (31)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene