WormBase Tree Display for Gene: WBGene00003926
expand all nodes | collapse all nodes | view schema
WBGene00003926 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F25H2 | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | pas-5 | Person_evidence | WBPerson1551 | |||||
Sequence_name | F25H2.9 | ||||||||
Molecular_name | F25H2.9 | ||||||||
F25H2.9.1 | |||||||||
CE09654 | |||||||||
Other_name | syt-2 | Paper_evidence | WBPaper00032104 | ||||||
CELE_F25H2.9 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | pas-5 | ||||||||
DB_info | Database | AceView | gene | 1L143 | |||||
WormQTL | gene | WBGene00003926 | |||||||
WormFlux | gene | WBGene00003926 | |||||||
NDB | locus_tag | CELE_F25H2.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003926|UniProtKB=Q95008 | |||||||
family | PTHR11599 | ||||||||
NCBI | gene | 172942 | |||||||
RefSeq | protein | NM_060364.7 | |||||||
SwissProt | UniProtAcc | Q95008 | |||||||
TREEFAM | TREEFAM_ID | TF106211 | |||||||
UniProt_GCRP | UniProtAcc | Q95008 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 09 Jan 2009 11:41:23 | WBPerson2970 | Name_change | Other_name | syt-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pas | ||||||||
Allele (12) | |||||||||
Strain | WBStrain00036234 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00087853 | ||||||||
00087854 | |||||||||
00087855 | |||||||||
00087856 | |||||||||
00087857 | |||||||||
00087858 | |||||||||
00087859 | |||||||||
00087860 | |||||||||
00087861 | |||||||||
00087862 | |||||||||
00087863 | |||||||||
00112010 | |||||||||
00112011 | |||||||||
00112012 | |||||||||
00112013 | |||||||||
Ortholog (37) | |||||||||
Paralog (13) | |||||||||
Structured_description | Concise_description | pas-5 encodes a proteasome alpha-type five subunit of the core 20S proteasome subcomplex; loss of pas-5 activity via RNAi results in a variety of defects including embryonic and larval lethality, sterility, and abnormal locomotion; loss of pas-5 activity also results in activation of SKN-1, a transcription factor required in adult worms for the acute response to oxidative stress and maternally for embryonic development. | Paper_evidence | WBPaper00004402 | |||||
WBPaper00006395 | |||||||||
WBPaper00024497 | |||||||||
WBPaper00025054 | |||||||||
WBPaper00030965 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 18 Jan 2008 00:00:00 | ||||||||
Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Expressed in body wall musculature; germ line; gonad; hypodermis; and vulva. Is an ortholog of human PSMA5 (proteasome 20S subunit alpha 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F25H2.9 | |||||||
Corresponding_transcript | F25H2.9.1 | ||||||||
Other_sequence (108) | |||||||||
Associated_feature | WBsf643695 | ||||||||
WBsf643696 | |||||||||
WBsf654826 | |||||||||
WBsf656880 | |||||||||
WBsf985038 | |||||||||
WBsf1010569 | |||||||||
WBsf218452 | |||||||||
Experimental_info | RNAi_result (36) | ||||||||
Expr_pattern | Expr9677 | ||||||||
Expr1027785 | |||||||||
Expr1031859 | |||||||||
Expr1149459 | |||||||||
Expr2014744 | |||||||||
Expr2032978 | |||||||||
Drives_construct | WBCnstr00008738 | ||||||||
WBCnstr00014220 | |||||||||
WBCnstr00035792 | |||||||||
Construct_product | WBCnstr00035792 | ||||||||
Microarray_results | SMD_F25H2.9 | ||||||||
192534_at | |||||||||
A_12_P105761 | |||||||||
Aff_F25H2.9 | |||||||||
GPL13394_WBGene00003926 | |||||||||
GPL13914_F25H2.9 | |||||||||
GPL14144_F25H2.9_106-165_0.917_20_C | |||||||||
GPL14144_F25H2.9_480-539_0.941_11_B | |||||||||
GPL14144_F25H2.9_580-639_0.948_5_A | |||||||||
GPL19516_CGZ0017996 | |||||||||
GPL19516_CGZ0017997 | |||||||||
GPL21109_F25H2.9.1 | |||||||||
GPL21109_F25H2.9.2 | |||||||||
GPL3518_CE09654 | |||||||||
GPL8304_CE_WBGene00003926_A | |||||||||
GPL8304_CE_WBGene00003926_B | |||||||||
GPL8304_CE_WBGene00003926_C | |||||||||
GPL8673_F25H2_9P00232 | |||||||||
GPL8673_F25H2_9P00396 | |||||||||
GPL8673_F25H2_9P00475 | |||||||||
GPL9450_F25H2.9 | |||||||||
cea2.c.02801 | |||||||||
Expression_cluster (164) | |||||||||
Interaction (154) | |||||||||
Map_info | Map | I | Position | 5.05517 | Error | 0.00012 | |||
Positive | Positive_clone | F25H2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |