WormBase Tree Display for Gene: WBGene00194852

WBGene00194852 SMap: S_parent: Sequence: T28A8
  Identity: Version: 1
    Name (4)
    DB_info: Database: WormFlux gene WBGene00194852
        NDB locus_tag CELE_T28A8.8
        Panther gene CAEEL|WormBase=WBGene00194852|UniProtKB=E2JL07
          family PTHR23362
        NCBI gene 13191798
        RefSeq protein NM_001268279.2
            NR_052832.1
        TrEMBL UniProtAcc E2JL07
        UniProt_GCRP UniProtAcc E2JL07
        RNAcentral URSid URS0000146BDC
    Species: Caenorhabditis elegans
    History: Version_change: 1 04 Nov 2009 15:33:56 WBPerson1983 Event: Split_from: WBGene00012111
      Split_from: WBGene00012111
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01498619
      WBVar01499774
      WBVar01498679
      WBVar01499629
      WBVar00876006
      WBVar00876007
      WBVar00876008
      WBVar01794434
    RNASeq_FPKM (74)
    Ortholog: chrIII_pilon.g9374 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (35)
    Structured_description: Automated_description: Enriched in germ line and head mesodermal cell based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and pgl-1 based on RNA-seq and microarray studies. Is affected by nine chemicals including rotenone; manganese chloride; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SPK domain and Domain of unknown function (DUF545). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28A8.8a
    Corresponding_CDS_history: T28A8.8:wp219
    Corresponding_transcript (2)
    Other_sequence: JI476460.1
  Experimental_info: RNAi_result: WBRNAi00082455 Inferred_automatically: RNAi_primary
      WBRNAi00006240 Inferred_automatically: RNAi_primary
      WBRNAi00054374 Inferred_automatically: RNAi_primary
      WBRNAi00082650 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1157924
      Expr2006595
      Expr2024812
    Microarray_results (15)
    Expression_cluster: WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050193:lsm-1(tm3585)_upregulated_L3
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053154:human-amyloid-beta_tau_regulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:Metformin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057006:DietaryRestriction_upregulated
      WBPaper00057158:mdt-15(tm2182)_dependent_15C_upregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00062056:dpl-1(n2994)_upregulated
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062146:MOG-7-degron_1h_regulated
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064632:daf-2(e1370)_downregulated_intestine
      WBPaper00064716:paraquat_upregulated
      WBPaper00065074:glna(-)_upregulated
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030985:Serratia_marcesens_upregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00033101:spr-5_regulated
      WBPaper00035227:heat_shock_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037611:RNP-8-associated
      WBPaper00037695:WC_CC_6-day
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
  Map_info: Positive: Positive_clone: T28A8 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III 21.2481
  Method: Gene