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WormBase Tree Display for Gene: WBGene00045481

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Name Class

WBGene00045481SMapS_parentSequenceM153
IdentityVersion1
NameSequence_nameM153.5
Molecular_nameM153.5
M153.5.1
CE41328
Other_nameCELE_M153.5Accession_evidenceNDBBX284606
Public_nameM153.5
DB_infoDatabaseAceViewgeneXM765
WormFluxgeneWBGene00045481
NDBlocus_tagCELE_M153.5
PanthergeneCAEEL|WormBase=WBGene00045481|UniProtKB=A6ZJ60
familyPTHR35017
NCBIgene6418862
RefSeqproteinNM_001129695.2
TREEFAMTREEFAM_IDTF319529
TrEMBLUniProtAccA6ZJ60
UniProt_GCRPUniProtAccA6ZJ60
SpeciesCaenorhabditis elegans
HistoryVersion_change105 Jul 2007 16:33:07WBPerson1983EventSplit_fromWBGene00010926
Split_fromWBGene00010926
StatusLive
Gene_infoBiotypeSO:0001217
Allele (39)
RNASeq_FPKM (74)
Ortholog (21)
ParalogWBGene00009060Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00010926Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016105Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00020766Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00044569Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in arcade cell and corpus based on single-cell RNA-seq studies. Is affected by several genes including skn-1; rrf-3; and eat-2 based on microarray and RNA-seq studies. Is affected by ten chemicals including stavudine; Zidovudine; and metformin based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSM153.5
Corresponding_transcriptM153.5.1
Associated_featureWBsf648589
WBsf1007222
WBsf1007223
WBsf236455
Experimental_infoRNAi_resultWBRNAi00050977Inferred_automaticallyRNAi_primary
WBRNAi00017219Inferred_automaticallyRNAi_primary
Expr_patternExpr1017014
Expr1040374
Expr1154681
Expr2005249
Expr2023467
Drives_constructWBCnstr00023216
Construct_productWBCnstr00023216
Microarray_results (15)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00044736:oscillating_dev_expression
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:spt-16(RNAi)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059527:lsm-1_upregulated_L1
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Anterior_arcade_cell
WBPaper00061340:ant_arc_V
WBPaper00061340:MC
WBPaper00061340:mc1
WBPaper00061340:pm1_pm2
WBPaper00061340:Posterior_arcade_cell
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:F58E6.13_17427-ifa-3
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:25C_vs_15C_upregulated_AFD
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00066232:ash-2(RNAi)_upregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00031003:hlh_1_enriched
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00038427:lin-54_embryo_changed
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00045015:acs-3(ft5)_downregulated
WBPaper00045294:50uM_TBBP_downregulated
WBPaper00045673:colistin_upregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
[cgc6390]:Cluster_B
Map_info (2)
MethodGene