WormBase Tree Display for Gene: WBGene00044588

WBGene00044588 SMap: S_parent: Sequence: ZK1236
  Identity: Version: 1
    Name: Sequence_name: ZK1236.9
      Molecular_name: ZK1236.9a
        ZK1236.9a.1
        CE38926
        ZK1236.9b
        CE50228
        ZK1236.9b.1
      Other_name: CELE_ZK1236.9 Accession_evidence: NDB BX284603
      Public_name: ZK1236.9
    DB_info: Database: AceView gene ZK1236.9
        WormFlux gene WBGene00044588
        NDB locus_tag CELE_ZK1236.9
        NCBI gene 3896744
        RefSeq protein NM_001313000.2
            NM_001038299.4
        TrEMBL UniProtAcc Q45EM0
            A0A0K3AUB2
        UniProt_GCRP UniProtAcc A0A0K3AUB2
    Species: Caenorhabditis elegans
    History: Version_change: 1 11 Jul 2005 17:11:59 WBPerson1849 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (55)
    RNASeq_FPKM (74)
    Ortholog (25)
    Paralog: WBGene00022864
    Structured_description: Concise_description: ZK1236.9 encodes a protein with no obvious non-nematode homologs; eitherZK1236.9, or ZK1236.5, or both proteins weakly inhibit DHC-1 in vivo; likewise, either ZK1236.9, or ZK1236.5, or both proteins are required inmass RNAi assays for normal osmoregulation and normally rapid growth. Paper_evidence: WBPaper00005654
            WBPaper00006395
            WBPaper00030897
          Curator_confirmed: WBPerson567
          Date_last_updated: 26 Aug 2007 00:00:00
      Automated_description: Enriched in ABplppppap; ABprppppap; intestine; and neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including eat-2; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by allantoin; Sirolimus; and Cry5B based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: ZK1236.9a
      ZK1236.9b
    Corresponding_transcript: ZK1236.9a.1
      ZK1236.9b.1
    Other_sequence: Dviv_isotig12884
    Associated_feature: WBsf651273
      WBsf993338
      WBsf993339
      WBsf993340
      WBsf1015422
      WBsf1015423
      WBsf227136
  Experimental_info: RNAi_result: WBRNAi00005938 Inferred_automatically: RNAi_primary
      WBRNAi00009457 Inferred_automatically: RNAi_primary
      WBRNAi00027042 Inferred_automatically: RNAi_primary
      WBRNAi00059167 Inferred_automatically: RNAi_primary
    Expr_pattern (4)
    Drives_construct: WBCnstr00023447
    Construct_product: WBCnstr00023447
    Microarray_results (18)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00044736:flat_dev_expression
      WBPaper00045486:starvation_downregulated
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:ADF
      WBPaper00061340:AWA
      WBPaper00061340:AWB
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061357:mett-10(ok2204)_downregulated_OP50
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:F45H10.2-R53.4_21676
      WBPaper00062103:neuron_enriched
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:35_2
      WBPaper00065841:35_3
      WBPaper00065841:146_0
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      cgc4489_group_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00034739:N2moreDR1350
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00048637:lin-35(n745)_starvation_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:mixed_oogenesis-somatic
  Map_info: Positive: Positive_clone: ZK1236 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -0.26129
  Method: Gene