WormBase Tree Display for Gene: WBGene00044243

WBGene00044243 SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: Sequence_name: F16C3.4
      Molecular_name: F16C3.4
        F16C3.4.1
        CE38324
      Other_name: CELE_F16C3.4 Accession_evidence: NDB BX284601
      Public_name: F16C3.4
    DB_info: Database: AceView gene 1K737
        WormFlux gene WBGene00044243
        NDB locus_tag CELE_F16C3.4
        NCBI gene 3565653
        RefSeq protein NM_001026221.6
        TrEMBL UniProtAcc G5EDK2
        UniProt_GCRP UniProtAcc G5EDK2
    Species: Caenorhabditis elegans
    History: Version_change: 1 14 Mar 2005 11:02:20 WBPerson1846 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (19)
    RNASeq_FPKM (74)
    Ortholog: WBGene00163089 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00083082 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00270359 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CSP26.g21621 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP40.g21010 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11643 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01967.g24129 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_002314 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g1980 Caenorhabditis elegans From_analysis: WormBase-Compara
      nigoni.pc_2016.07.11_022.g28387 Caenorhabditis nigoni From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in amphid sheath cell; germ line; intestine; sensory neurons; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; let-60; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including Psoralens; Sirolimus; and Rifampin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F16C3.4
    Corresponding_transcript: F16C3.4.1
    Associated_feature: WBsf656847
      WBsf984928
      WBsf218397
  Experimental_info: RNAi_result: WBRNAi00003011 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018399
      Expr1148764
      Expr2002656
      Expr2020873
    Drives_construct: WBCnstr00023680
    Construct_product: WBCnstr00023680
    Microarray_results (13)
    Expression_cluster: WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00042194:nhr-114(RNAi)_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_downregulated
      WBPaper00045809:rsd-2(yp10)_downregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00049489:AMsh-glia_enriched
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050231:male_enriched
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056169:rrf-3(pk1426)_upregulated_L4
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:OLQ
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061853:osm-3(dh441)_downregulated
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065841:39_3
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00045673:colistin_downregulated
      [cgc5376]:let-60(G12V)-regulated_genes
      [cgc6390]:intrinsic
  Map_info: Positive: Positive_clone: F16C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 4.69881
  Method: Gene