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WormBase Tree Display for Gene: WBGene00023477

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Name Class

WBGene00023477SMapS_parentSequenceC03G5
IdentityVersion2
NameCGC_namenspc-1Person_evidenceWBPerson655
Sequence_nameC03G5.8
Molecular_nameC03G5.8
C03G5.8.1
CE37182
Other_nameCELE_C03G5.8Accession_evidenceNDBBX284606
Public_namenspc-1
DB_infoDatabaseAceViewgeneXJ152
WormFluxgeneWBGene00023477
NDBlocus_tagCELE_C03G5.8
PanthergeneCAEEL|WormBase=WBGene00023477|UniProtKB=Q65ZI6
familyPTHR31330
NCBIgene259717
RefSeqproteinNM_001029181.7
TREEFAMTREEFAM_IDTF318876
TrEMBLUniProtAccQ65ZI6
UniProt_GCRPUniProtAccQ65ZI6
SpeciesCaenorhabditis elegans
HistoryVersion_change104 Aug 2004 22:11:54WBPerson1849EventCreated
218 May 2005 14:07:22WBPerson2970Name_changeCGC_namenspc-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspc
AlleleWBVar01470181
WBVar01499963
WBVar01499781
WBVar01500168
WBVar01500169
WBVar01499642
WBVar00253334
WBVar01498960
WBVar01500067
RNASeq_FPKM (74)
Ortholog (259)
Paralog (17)
Structured_descriptionAutomated_descriptionEnriched in excretory gland cell and neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq and microarray studies. Is affected by fifteen chemicals including Ethanol; rotenone; and mianserin based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC03G5.8
Corresponding_transcriptC03G5.8.1
Other_sequenceCBC00222_5
CBC00222_1
CBC00738_2
CBC00222_3
CBC13477_1
FD516820.1
CBC07439_1
CBC00738_1
CBC00222_2
Associated_featureWBsf237696
Experimental_infoRNAi_resultWBRNAi00039534Inferred_automaticallyRNAi_primary
WBRNAi00047106Inferred_automaticallyRNAi_primary
Expr_patternExpr1143640
Expr2014470
Expr2032710
Drives_constructWBCnstr00023866
Construct_productWBCnstr00023866
Microarray_results (20)
Expression_clusterWBPaper00038118:aak-2(gt33)_downregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041954:ethanol_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:daf-2(e1370)_upregulated_neuron
WBPaper00048988:daf-16(mu86)_downregulated_neuron
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049954:BPA_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050990:NMDA-neuron_enriched
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053599:female_vs_male_downregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055354:Metformin_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057196:raga-1(ok386)_downregulated)
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058948:npr-8(ok1439)_downregulated_OP50
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059373:stt-3(RNAi)_downregulated
WBPaper00059421:daf-3(mgDf90)_upregulated
WBPaper00059605:simr-1(cmp36)_upregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060273:isp-1(qm150)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061340:Excretory_gland
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061527:nspc-1_614-nspc-10_22525
WBPaper00061651:Excretory_gland_cell_enriched
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062440:crh-1(syb385)_upregulated
WBPaper00062606:rotenone_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064632:daf-2(e1370)_downregulated_intestine
WBPaper00064721:fasn-1(g14)_upregulated_starved
WBPaper00064841:tent-5(tm3504)_downregulated_transcript
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:89_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031060:2-deoxy-D-glucose_upregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00031832:slr-2_regulated
WBPaper00032948:FedUp
WBPaper00034739:N2lessDR1350
WBPaper00037695:LD_DD_6-day
WBPaper00039851:HK_C_albicans_vs_HK_OP50
WBPaper00042236:flcn-1(ok975)_upregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00051387:Triclosan_downregulated
Map_infoMapXPosition0.099404
PositivePositive_cloneC03G5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00064841
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene