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WormBase Tree Display for Gene: WBGene00021844

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Name Class

WBGene00021844SMapS_parentSequenceY54E10BR
IdentityVersion2
NameCGC_namesec-11
Sequence_nameY54E10BR.5
Molecular_name (3)
Other_nameY54E10BR.dCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y54E10BR.5Accession_evidenceNDBBX284601
Public_namesec-11
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Nov 2018 16:28:49WBPerson1983Name_changeCGC_namesec-11
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsec
Allele (43)
StrainWBStrain00049462
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP1924
Ortholog (44)
Structured_descriptionAutomated_descriptionPredicted to enable peptidase activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of signal peptidase complex. Is an ortholog of human SEC11C (SEC11 homolog C, signal peptidase complex subunit).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54E10BR.5
Corresponding_transcriptY54E10BR.5.1
Other_sequence (71)
Associated_featureWBsf664006
WBsf983047
WBsf1009444
WBsf219090
Experimental_infoRNAi_result (30)
Expr_patternExpr1013422
Expr1039588
Expr1160800
Expr2007895
Expr2026137
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032528:L3_enriched
WBPaper00035073:mitochondria_protein
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_adult_enriched
WBPaper00037950:CEP-sheath-cells_adult_SelectivelyEnriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038213:E.coli(LF82)_72h_upregulated
WBPaper00038289:oocyte_protein
WBPaper00040412:germline-regulated_daf-16_target
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
WBPaper00046303:P.aeruginosa_upregulated_protein
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00048810:CoQ-deficiency_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049732:blmp-1(tm548)_vs_N2_downregulated
WBPaper00050015:ifg-1(RNAi)_downregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053810:clk-1(qm30)_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056617:adr-2(gv42)_upregulated_embryo_protein
WBPaper00056617:adr-2(ok735)_upregulated_embryo_protein
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059605:MUT-16_interacting
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:snr-6-lsm-3
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_downregulated_N2_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064716:paraquat_upregulated
WBPaper00065120:body-muscle-transcriptome
cgc4489_group_2
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031252:AIN-2_IP_enriched
WBPaper00032062:age_regulated_genes
WBPaper00032948:FedUp
WBPaper00034757:down_by_oxidative_stress
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_F
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_24h
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_6
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(41_min)
[cgc5767]:expression_class_MD_pd(53_min)
[cgc5767]:expression_class_ME
Interaction (26)
Map_infoPositivePositive_cloneY54E10BRInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-4.71223
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00058870
WBPaper00061547
MethodGene