WormBase Tree Display for Gene: WBGene00020073

WBGene00020073 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 3
    Name: CGC_name: sdz-28 Paper_evidence: WBPaper00024645
          Person_evidence: WBPerson374
      Sequence_name: R52.1
      Molecular_name: R52.1
        R52.1.1
        CE12824
      Other_name: bath-16 Person_evidence: WBPerson655
        CELE_R52.1 Accession_evidence: NDB BX284602
      Public_name: sdz-28
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 19 Aug 2005 17:08:06 WBPerson2970 Name_change: CGC_name: sdz-28
        3 22 Aug 2005 16:08:42 WBPerson2970 Name_change: Other_name: bath-16
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sdz
    Allele (125)
    RNASeq_FPKM (74)
    GO_annotation: 00029608
    Ortholog (79)
    Paralog (82)
    Structured_description: Automated_description: Involved in gastrulation. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R52.1
    Corresponding_transcript: R52.1.1
    Associated_feature: WBsf644001
      WBsf654856
      WBsf657382
      WBsf986879
      WBsf220903
  Experimental_info: RNAi_result: WBRNAi00073244 Inferred_automatically: RNAi_primary
      WBRNAi00052025 Inferred_automatically: RNAi_primary
      WBRNAi00034960 Inferred_automatically: RNAi_primary
      WBRNAi00084805 Inferred_automatically: RNAi_primary
      WBRNAi00008247 Inferred_automatically: RNAi_primary
      WBRNAi00084807 Inferred_automatically: RNAi_primary
      WBRNAi00017902 Inferred_automatically: RNAi_primary
      WBRNAi00073245 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10430
      Expr10431
      Expr1013406
      Expr1038720
      Expr1155664
      Expr2015686
      Expr2033919
    Drives_construct (2)
    Microarray_results (16)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00032528:L3_depleted
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035197:fer-1_upregulated
      WBPaper00037950:hypodermis_embryo_enriched
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00038438:E.faecalis_24hr_downregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044426:rotenone_5day_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049266:trx-1(ok1449)_regulated_unstressed
      WBPaper00049920:hyl-2(tm2031)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050561:indole_10-fold_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051305:vit-2(ac3)_upregulated
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00053909:N2_vs_CB4856_downregulated
      WBPaper00054191:H3.3(null)_L1_upregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056039:hda-6(ok3203)_downregulated
      WBPaper00056039:ptl-1(ok621)_upregulated
      WBPaper00056139:gut-microbiota_downregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056284:ints-5(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056446:hsb-1(cg116)_upregulated
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058948:PA14_upregulated
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059426:Ag-nanoparticles_downregulated
      WBPaper00059566:wdr-23(mac32)_downregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059728:5ug_cholesterol_downregulated
      WBPaper00059728:20ug_cholesterol_downregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
      WBPaper00060921:tdc-1(n3419)_downregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061007:X.citri_downregulated
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:rect_D
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:fbxc-28-sdz-28
      WBPaper00062156:jmjd-5(zr1234)_updownregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064156:lbp-3(overexpress)_downregulated
      WBPaper00064156:lipl-4(overexpress)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064727:daf-2(e1370)_downregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066110:Cisplatin_downregulated_diploid
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00066204:CdCl2_downregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_downregulated_WT
      cgc4386_cluster_6_2
      cgc4489_group_5
      WBPaper00025032:cluster_9
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00029437:rde-4_downregulated
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041960:daf-16_fasting_upregulated
      WBPaper00041960:kgb-1_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042258:DA1877_downregulated_GravidAdult
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048567:dnj-14_downregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_4
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(122_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(23_min)
      [cgc6390]:Cluster_E
    Interaction (197)
  Map_info: Map: II Position: -13.8445 Error: 0.000866
    Positive: Positive_clone: R52 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5452
    Pseudo_map_position
  Reference: WBPaper00038341
    WBPaper00041771
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene