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WormBase Tree Display for Gene: WBGene00018167

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Name Class

WBGene00018167SMapS_parentSequenceF38A5
IdentityVersion2
NameCGC_namenspb-4Person_evidenceWBPerson655
Sequence_nameF38A5.10
Molecular_nameF38A5.10
F38A5.10.1
CE10044
Other_nameCELE_F38A5.10Accession_evidenceNDBBX284604
Public_namenspb-4
DB_infoDatabaseAceViewgene4H361
WormQTLgeneWBGene00018167
WormFluxgeneWBGene00018167
NDBlocus_tagCELE_F38A5.10
PanthergeneCAEEL|WormBase=WBGene00018167|UniProtKB=Q94210
familyPTHR31887
NCBIgene185446
RefSeqproteinNM_068611.3
TREEFAMTREEFAM_IDTF319426
TrEMBLUniProtAccQ94210
UniProt_GCRPUniProtAccQ94210
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:59WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
206 May 2005 10:44:15WBPerson2970Name_changeCGC_namenspb-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspb
AlleleWBVar02156500
WBVar01499395
WBVar01499396
WBVar02120505
WBVar01499633
WBVar00916944
WBVar01500245
StrainWBStrain00051272
RNASeq_FPKM (74)
Ortholog (15)
ParalogWBGene00018162Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WBGene00018166Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WBGene00018169Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WBGene00019152Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WBGene00018170Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
Structured_descriptionAutomated_descriptionEnriched in germ line and pharynx based on RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on microarray; quantitative PCR; and RNA-seq studies. Is affected by ten chemicals including hydrogen sulfide; D-glucose; and Cry5B based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1459) and Protein of unknown function DUF1459.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (3)
Experimental_infoRNAi_resultWBRNAi00008764Inferred_automaticallyRNAi_primary
WBRNAi00025434Inferred_automaticallyRNAi_primary
WBRNAi00069426Inferred_automaticallyRNAi_primary
WBRNAi00085531Inferred_automaticallyRNAi_primary
WBRNAi00014533Inferred_automaticallyRNAi_primary
WBRNAi00046668Inferred_automaticallyRNAi_primary
WBRNAi00014526Inferred_automaticallyRNAi_primary
WBRNAi00031940Inferred_automaticallyRNAi_primary
WBRNAi00014524Inferred_automaticallyRNAi_primary
WBRNAi00046674Inferred_automaticallyRNAi_primary
Expr_patternExpr1027761
Expr1150542
Expr2014458
Expr2032698
Drives_constructWBCnstr00026730
Construct_productWBCnstr00026730
Microarray_resultsSMD_F38A5.10
A_12_P107539
Aff_F38A5.10
GPL8304_CE_WBGene00018167_A
GPL8673_F38A5_10P00113
GPL8673_F38A5_10P00123
GPL9450_F38A5.10
cea2.d.24330
Expression_clusterWBPaper00024375:Up_vhl-1_vs_hif-1_vhl-1
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032196:npr-1(ad609)_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00040285:H2S_24hr_downregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00042561:smgl-2(RNAi)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:germline_specific
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00046509:lin-35(n745)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050990:pharynx_enriched
WBPaper00050990:pharynx_expressed
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_downregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_L4
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00057068:numr-1(RNAi)_upregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059231:alh-6(lax105)_L4_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060703:nas-38(ok3407)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061106:endu-2(tm4977)_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061613:human-alpha-Synuclein(A53T)_downregulated
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
WBPaper00061613:human-amyloid-beta_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062606:rotenone_downregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064494:postdauer_downregulated_WholeAnimal
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00064505:tamoxifen_downregulated
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_2_5
cgc4489_group_2
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00033101:spr-5_regulated
WBPaper00036286:Pattern_G
WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(122_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:male_sex-enriched
InteractionWBInteraction000122426
WBInteraction000279394
WBInteraction000331204
WBInteraction000399913
Map_infoMapIVPosition3.21279
PositivePositive_cloneF38A5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene