WormBase Tree Display for Gene: WBGene00017326

WBGene00017326 SMap: S_parent: Sequence: F10C1
  Identity: Version: 2
    Name: CGC_name: dmd-5 Person_evidence: WBPerson1375
            WBPerson1997
      Sequence_name: F10C1.5
      Molecular_name: F10C1.5
        F10C1.5.1
        CE29753
      Other_name: CELE_F10C1.5 Accession_evidence: NDB BX284602
      Public_name: dmd-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Jul 2005 13:34:00 WBPerson2970 Name_change: CGC_name: dmd-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dmd
    Allele (25)
    Strain: WBStrain00031994
      WBStrain00051973
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog (40)
    Paralog (9)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in male anatomical structure morphogenesis and negative regulation of synapse pruning. Predicted to be located in nucleus. Expressed in AVG; ventral nerve cord; and in male. Is an ortholog of human DMRTA2 (DMRT like family A2) and DMRTB1 (DMRT like family B with proline rich C-terminal 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F10C1.5
    Corresponding_transcript: F10C1.5.1
    Other_sequence (13)
    Associated_feature: WBsf650093
      WBsf978816
      WBsf987958
      WBsf1012263
      WBsf223096
    Transcription_factor: WBTranscriptionFactor000309
  Experimental_info: RNAi_result: WBRNAi00071147 Inferred_automatically: RNAi_primary
      WBRNAi00027266 Inferred_automatically: RNAi_primary
      WBRNAi00025056 Inferred_automatically: RNAi_primary
      WBRNAi00044219 Inferred_automatically: RNAi_primary
      WBRNAi00030749 Inferred_automatically: RNAi_primary
      WBRNAi00066782 Inferred_automatically: RNAi_primary
      WBRNAi00013036 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr5714
      Expr7499
      Expr14521
      Expr1013292
      Expr1037450
      Expr1148178
      Expr1200011
      Expr2010956
      Expr2029195
    Drives_construct: WBCnstr00004010
      WBCnstr00012644
      WBCnstr00027385
      WBCnstr00041072
    Construct_product: WBCnstr00027385
    Microarray_results (19)
    Expression_cluster: WBPaper00028867:HLH-1_induced_TF
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00037950:AVE-neuron_embryo_SelectivelyEnriched
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044316:CH3HgCl_2.0uM_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00047132:skn-1(RNAi)_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049954:BPS_upregulated
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053771:down_by_skn-1(RNAi)_at_3h-NaCl
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056167:Cry5B_upregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:20ug_cholesterol_downregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADL
      WBPaper00061340:ADL_parent
      WBPaper00061340:ASH
      WBPaper00061340:ASJ
      WBPaper00061340:Ciliated_amphid_neuron
      WBPaper00061340:I2_grandparent
      WBPaper00061340:Neuroblast_ASJ_AUA
      WBPaper00061340:RIM
      WBPaper00061340:RIM_parent
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:cfz-2_18944-cfz-2_2268
      WBPaper00061651:RIM_enriched
      WBPaper00061853:osm-3(dh441)_upregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:hypoxia_downregulated_F3
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065560:E.coli-HB101_downregulated_F3
      WBPaper00065623:138
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:99_0
      WBPaper00065841:120_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_downregulated_WT
      WBPaper00025032:cluster_16
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00031003:hlh_1_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00040116:pRJ-FR.5_up_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_5
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(122_min)
    Interaction (162)
  Map_info: Map: II Position: -0.93372 Error: 0.004814
    Positive: Positive_clone: F10C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5321
        4278
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00038491
    WBPaper00047608
    WBPaper00049547
    WBPaper00052199
    WBPaper00055090
    WBPaper00061738
    WBPaper00064718
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene