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WormBase Tree Display for Gene: WBGene00017100

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Name Class

WBGene00017100SMapS_parentSequenceE02H9
Identity (6)
Gene_infoBiotypeSO:0000336
Allele (37)
RNASeq_FPKM (74)
OrthologWBGene00027937Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00027936Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00140671Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00078969Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00084996Caenorhabditis remaneiFrom_analysisTreeFam
Paralog (30)
Structured_descriptionAutomated_descriptionEnriched in BAG; OLL; PVD; and intestine based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including eat-2; elt-2; and nhr-49 based on microarray and RNA-seq studies. Is affected by seven chemicals including Alovudine; Sodium Chloride; and Rifampin based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDS_historyE02H9.2:wp275
Corresponding_pseudogeneE02H9.2
Associated_featureWBsf644982
Experimental_infoExpr_patternExpr1027459
Expr1147604
Expr2002142
Expr2020364
Microarray_results (17)
Expression_clusterWBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:BAG-neuron_embryo_enriched
WBPaper00037950:BAG-neuron_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045861:wdr-5(ok1417)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059191:hsp-16.2p-LIN-29_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060951:mrpl-2(osa3)_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061527:172183_at-176110_at
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00065120:body-muscle-transcriptome
WBPaper00065993:glp-1(e2141)_upregulated
cgc4489_group_6
WBPaper00026980:intestine_enriched
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_G
WBPaper00045960:L4-lethargus_upregulated
WBPaper00048989:N2_rapamycin_upregulated
[cgc6390]:Cluster_B
[cgc6390]:herm_soma-enriched
Interaction (22)
Map_infoPositivePositive_cloneE02H9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-13.7037
MethodGene