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WormBase Tree Display for Gene: WBGene00015622

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Name Class

WBGene00015622SMapS_parentSequenceC09B8
IdentityVersion1
NameSequence_nameC09B8.3
Molecular_nameC09B8.3
C09B8.3.1
CE52911
Other_nameCELE_C09B8.3Accession_evidenceNDBBX284606
Public_nameC09B8.3
DB_infoDatabaseAceViewgeneXG626
WormQTLgeneWBGene00015622
WormFluxgeneWBGene00015622
NDBlocus_tagCELE_C09B8.3
PanthergeneCAEEL|WormBase=WBGene00015622|UniProtKB=Q17845
familyPTHR33748
NCBIgene182439
RefSeqproteinNM_001368521.3
TREEFAMTREEFAM_IDTF352020
TrEMBLUniProtAccQ17845
UniProt_GCRPUniProtAccQ17845
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (57)
RNASeq_FPKM (74)
GO_annotation00059371
00059372
00121450
Ortholog (26)
ParalogWBGene00008496Caenorhabditis elegansFrom_analysisPanther
WBGene00010977Caenorhabditis elegansFrom_analysisPanther
WBGene00012439Caenorhabditis elegansFrom_analysisPanther
WBGene00013195Caenorhabditis elegansFrom_analysisPanther
WBGene00017299Caenorhabditis elegansFrom_analysisPanther
WBGene00045418Caenorhabditis elegansFrom_analysis (2)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane. Predicted to be part of acetylcholine-gated channel complex.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC09B8.3
Corresponding_CDS_historyC09B8.3:wp268
Corresponding_transcriptC09B8.3.1
Other_sequenceJI169364.1
CRC09572_1
CR02986
Associated_featureWBsf1005448
WBsf1023046
WBsf237421
Experimental_infoRNAi_resultWBRNAi00040158Inferred_automaticallyRNAi_primary
WBRNAi00010505Inferred_automaticallyRNAi_primary
Expr_patternExpr1028514
Expr1036686
Expr1144234
Expr2000634
Expr2018858
Drives_constructWBCnstr00028710
Construct_productWBCnstr00028710
Microarray_results (18)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037624:ets-4(ok165)_upregulated
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044760:somatic_specific
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045774:clk-1_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_specific
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053771:down_by_skn-1(RNAi)_at_24h-NaCl
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055013:spt-16(RNAi)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L4
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056169:rrf-3(pk1426)_upregulated_L2
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056330:glycine_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057068:numr-1(RNAi)_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(et18)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:ALA
WBPaper00061340:pm7
WBPaper00061527:C38C6.3-acdh-6
WBPaper00062118:neural-HSF-1_downregulated
WBPaper00062156:jmjd-1.2(zr1010)_upregulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062534:fat-P-80_downregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030985:Erwinia_carotovora_downregulated
WBPaper00032948:FedUp
WBPaper00034739:N2lessDR1350
WBPaper00034739:RIL17lessRIL14
WBPaper00035479:daf-16(RNAi)_upregulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_G
WBPaper00038172:tax-6null_down_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045673:colistin_upregulated
WBPaper00046083:oga-1(ok1207)_OP50_downregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00046548:dafachronic-acid_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
Interaction (20)
Map_infoPositivePositive_cloneC09B8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX-3.89437
ReferenceWBPaper00065080
MethodGene